Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq41242 104 3e-17 seq25488 98.7 1e-15 seq15016 96.9 4e-15 seq38797 95.1 1e-14 seq19607 89.7 6e-13 seq40947 86.0 7e-12 >seq41242 Length=195047 Score = 104 bits (114), Expect = 3e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| ||||| || ||||| || || |||| || |||||||| || || ||| Sbjct 171197 TCCTTTTGAATGTTGTAGTCTGCCAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCAAAT 171256 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | | |||||||||| || | || |||||||||| |||||| || | | Sbjct 171257 ATCAACCTTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTG 171316 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | || || |||| ||||| || | ||||||||||| || || || ||||| Sbjct 171317 TCAATGGTATCAGAGCTC---TCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTCTTG 171373 Query 42195 ACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 171374 ACAAAGATCTGCAT 171387 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| |||||||||||||| || || || || | || || ||||| || |||||||| Sbjct 170969 TCCTTCTGAATATTGTAATCTGCAAGGGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAG 171028 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | |||||| || | || | | |||||||||| ||| ||| |||| | Sbjct 171029 ATTAGCCTCTGCTGATCTGGCGGGATCCCCTCCTTGTCCTGGATCTTTGCCTTGACATTA 171088 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | ||||| |||| || || || | |||||||| || || || |||||||| Sbjct 171089 TCGATGGTGTCCGAGCTC---TCTACTTCTAAGGTGATGGTCTTTCCAGTAAGCGTCTTC 171145 Query 42195 ACAAAGATTTGCAT 42208 ||||| |||||||| Sbjct 171146 ACAAATATTTGCAT 171159 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | ||| | ||| | ||| ||||||||||| || || ||||| Sbjct 171388 ACCACCCCTAAGACGAAGCACAAGATGGAGGGTGGATTCCTTTTGAATGTTATAGTCAGC 171447 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| ||||| || ||||||| |||||||| | || Sbjct 171448 AAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGGTCCGGGGG 171507 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG---TTTGAGCGTCGCCACCGTGTC---GCTCGA 42154 | || |||||||||| || | || | || | |||| | ||||| |||| Sbjct 171508 GATGCCCTCCTTGTCC-TGTATCTTAGCCTTTACATTGTCG--ATGGTGTCCGAGCTC-- 171562 Query 42155 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || | ||||| || || || || || ||||| ||||| || ||||| Sbjct 171563 -TCCACCTCAAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACAAATATCTGCAT 171615 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||||||||| || || ||||| || | || || ||||| || ||||| || Sbjct 146705 TCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 146764 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | |||||| || | || | || ||| |||||| ||| ||| || | | Sbjct 146765 ATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTA 146824 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | || || |||| ||||| || | |||||||| || ||||| || ||||| Sbjct 146825 TCAATTGTATCGGAGCTC---TCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTC 146881 Query 42195 ACAAAGATTTGCAT 42208 ||||| || ||||| Sbjct 146882 ACAAAAATCTGCAT 146895 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||||||||| || || ||||| || | || || ||||| || ||||| || Sbjct 151869 TCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 151928 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | |||||| || | || | || ||| |||||| ||| ||| || | | Sbjct 151929 ATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTA 151988 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | || || |||| ||||| || | |||||||| || ||||| || ||||| Sbjct 151989 TCAATTGTATCGGAGCTC---TCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTC 152045 Query 42195 ACAAAGATTTGCAT 42208 ||||| || ||||| Sbjct 152046 ACAAAAATCTGCAT 152059 >seq25488 Length=371609 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || ||||| || || |||||||| || | || || ||||||||||| ||||| Sbjct 181524 CTCCTTCTGGATATTATAGTCGGCCAGAGTACGTCCATCCTCGAGCTGCTTACCGGCGAA 181465 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || || |||||||| | || | || ||||||||| || | || | | | ||| Sbjct 181464 GATAAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCC-TGGATCTTGGCCTTAACGT 181406 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| |||||||| || | || || || || |||||||| || || | Sbjct 181405 TGTCAATGGTATCGGAGGATTCCACCTCCAGGGTAATCGTCTTCCCCGTTAGGGTTTTCA 181346 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 181345 CGAAGATCTGCATCTT 181330 >seq15016 Length=583550 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || ||||||||||| || || || || |||| || |||||||| || ||||| Sbjct 437720 TCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAG 437661 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | ||||| || || | || | || |||||| ||| || |||||| | | ||| Sbjct 437660 ATTAAGCGCTGTTGATCTGGCGGAATGCCCTCCTTATCC-TGGATTTTTGCCTTAACGTT 437602 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || || ||||| |||| ||||| || || |||||||| || || || Sbjct 437601 GTCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTGAC 437542 Query 42197 AAAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 437541 GAAGATCTGCATCTT 437527 >seq38797 Length=1288649 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| ||||| || ||||| || || | || || |||||||| || || || Sbjct 629182 CTCCTTTTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAA 629123 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||| || | ||| ||||| | || | | |||||||||| || | || | | | ||| Sbjct 629122 TATCAGCCTCTGTTGGTCCGGGGGGATTCCCTCCTTGTCC-TGGATCTTGGCCTTAACGT 629064 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || || | |||||||| ||||| ||||| |||| Sbjct 629063 TGTCAATGGTGTCAGAGCTC---TCAACCTCTAAGGTGATGGTCTTGCCGGTTAGAGTCT 629007 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||| ||||| Sbjct 629006 TCACGAAGATCTGCAT 628991 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||| | |||| ||| | ||| |||||| || || ||||||||||| Sbjct 628989 CCTCCCCTCAGACGGAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 628930 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| || || || || || | ||||||||| | || Sbjct 628929 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 628870 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | ||| |||||| || | || | | | ||| | | | ||||| |||| || Sbjct 628869 ATACCCTCTTTGTCC-TGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTC---TC 628814 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || ||||| || || |||||||| ||||| ||||| Sbjct 628813 AACCTCTAGGGTGATCGTCTTGCCAGTGAGAGTCTTTACGAAGATCTGCAT 628763 >seq19607 Length=286188 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || ||||||||||| || || || || |||| || |||||||| || ||||| Sbjct 225701 TCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAG 225642 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | ||||| || || | || | || |||||| ||| ||| ||| || | | Sbjct 225641 ATTAAGCGCTGTTGATCCGGCGGAATGCCCTCCTTATCCTGGATCTTTGCCTTAACGTTA 225582 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | || || || ||||| |||| ||||| || || |||||||| || || || Sbjct 225581 TCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGAGTTTTGACG 225522 Query 42198 AAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 225521 AAGATCTGCATCTT 225508 >seq40947 Length=4604 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/194 (70%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || |||||||| |||| || || || | || || ||||||||||| ||||| Sbjct 1643 TCCTTCTGGATATTGTAGTCAGATAGGGTTCGGCCATCCTCAAGCTGCTTACCGGCGAAG 1584 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | |||||||| | | | || ||||||||| ||| || || | || Sbjct 1583 ATTAGCCTTTGCTGGTCCGGAGCGATGCCTTCCTTGTCCTGGATCTTCGACTTCACGTTC 1524 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | ||||| |||| ||||| |||| || ||||| ||||| || || || || Sbjct 1523 TCAATGGTGTCGGAGCTC---TCCACCTCGAGTGTAATGGTCTTGCCTGTGAGGGTTTTG 1467 Query 42195 ACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 1466 ACAAAGATCTGCAT 1453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542717783755680