Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq25488 105 7e-18 seq25504 91.5 1e-13 seq41242 87.8 2e-12 seq40947 84.2 2e-11 seq38797 84.2 2e-11 seq19607 84.2 2e-11 seq15016 82.4 8e-11 >seq25488 Length=371609 Score = 105 bits (116), Expect = 7e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || || |||||| || |||||| |||||||| || ||||||| Sbjct 181526 GACTCCTTCTGGATATTATAGTCGGCCAGAGTACGTCCATCCTCGAGCTGCTTACCGGCG 181467 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || || || ||||||||||| || ||||| ||||| || | || | |||| Sbjct 181466 AAGATAAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTC-CTGGATCTTGGCCTTAAC 181408 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||| |||| || |||||||| | || | ||| || || || || |||| Sbjct 181407 GTTG-TCAATGGTATCGGAGGATTCCACCTCCAGGGTAATCGTCTTCCCCGTTAGGGTTT 181349 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 181348 TCACGAAGATCTGCAT 181333 >seq25504 Length=639989 Score = 91.5 bits (100), Expect = 1e-13 Identities = 170/249 (68%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 52312 ATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCG 52371 |||| ||||| ||| || ||||| | |||||||||||||| | ||||||| Sbjct 367625 ATGCCATCGAGACCGTCCCCTGCGTCGCCCGCAAGGCTCAGTGGGCCCTACGTTGGATCG 367566 Query 52372 AGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGt 52431 | || | || | | || |||||||| | || || || || ||||| | | Sbjct 367565 A---CGCCTCCAATTCATTTGCAGAGCGCATCCTTGCGTTTGCTTGCGTTGAGGGAATCT 367509 Query 52432 ttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCC 52491 | || ||||| ||||| |||||||| | | || | || ||| |||||||||| | Sbjct 367508 TCTTCTCCGGTAGCTTCTGTGCCATCTTCTGGCTCAAGAAGAGAGGGCTAATGCCCGGTC 367449 Query 52492 TGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCC 52551 | || ||| ||||||| | ||||| || ||||| || |||||| |||||||| |||| Sbjct 367448 TCACCTTCTCCAACGAGCTCATATCTCGTGACGAGGGTCTGCACTGTGACTTTGCTTGCC 367389 Query 52552 TCTACTACA 52560 | ||||| Sbjct 367388 TTCTCTACA 367380 >seq41242 Length=195047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||||||||| || ||||| |||||| || || || |||| | Sbjct 171194 GATTCCTTTTGAATGTTGTAGTCTGCCAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCA 171253 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || | | || ||||| ||||| || || || ||||| |||||| || | | Sbjct 171254 AATATCAACCTTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTCACA 171313 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | ||||||||| | || | ||||| ||||| || || || Sbjct 171314 TTG-TCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTCTT 171372 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 171373 GACAAAGATCTGCAT 171387 >seq40947 Length=4604 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | |||| | | |||||||| || |||||||||||| Sbjct 1223 CCTCCCCGAAGACGAAGAACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1164 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || ||||| |||| | || || | ||| |||||||| || Sbjct 1163 AGGGTTCGGCCGTCCTCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGG 1104 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| || |||| || |||| | || | ||||||| |||||| Sbjct 1103 ATTCCCTCCTTGTC-CTGGATTTTGGTCTTAACGTTCTCGATCGTGTCGGAACTCTCCAC 1045 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || || || || || |||||||| Sbjct 1044 CTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTAACGAATATCTGCAT 997 >seq38797 Length=1288649 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||| | ||||| || | | ||||||||||||||||||||||| | Sbjct 629217 CCTCCCCTCAGACGGAGGACTAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCCGCC 629158 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || |||| | | || || | |||||||||||| || Sbjct 629157 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAATATCAGCCTCTGTTGGTCCGGGGGG 629098 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| || | || | |||| ||| || | |||||| | ||| | Sbjct 629097 ATTCCCTCCTTGTC-CTGGATCTTGGCCTTAACGTTG-TCAATGGTGTCAGAGCTCTCAA 629040 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || ||||| || || || |||||||| Sbjct 629039 CCTCTAAGGTGATGGTCTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 628991 >seq19607 Length=286188 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || || ||||| ||| | ||||| |||||| || || || |||| Sbjct 225704 GATTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCG 225645 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||||| |||||||| ||||| || || || || || || ||| ||| || | Sbjct 225644 AAGATTAAGCGCTGTTGATCCGGCGGAATGCCCTCCTTATCCTGGATCTTTGCCTTAACG 225585 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || || | ||||||||||||| || | ||| || || || |||||||| Sbjct 225584 TTATCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGAGTTTTG 225525 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 225524 ACGAAGATCTGCAT 225511 >seq15016 Length=583550 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || || ||||| ||| | ||||| |||||| || || || |||| Sbjct 437723 GATTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCG 437664 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||||| |||||||| || || || || || || || || ||||||| | |||| Sbjct 437663 AAGATTAAGCGCTGTTGATCTGGCGGAATGCCCTCCTTATCCTGGATTTTT-GCCTTAAC 437605 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | || || | ||||||||||||| || | ||| || || || || |||| Sbjct 437604 GTTGT-CGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTT 437546 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 437545 TGACGAAGATCTGCAT 437530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495810168481440