Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq19607 104 2e-17
seq25488 100 3e-16
seq15016 100 3e-16
seq40947 91.5 1e-13
seq14985 82.4 7e-11
>seq19607
Length=286188
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | || || || ||||| |||||||| |||||||| |||||| |
Sbjct 225737 CCCCCACGGAGGCGGAGAACGAGGTGAAGCGTCGATTCCTTCTGGATATTGTAATCGGCG 225678
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| || || | || || || ||| | || || || || || |||||||||
Sbjct 225677 AGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATTAAGCGCTGTTGATCCGGCGGA 225618
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
||||| || ||||| || || ||| || | || | || | || || || ||||| ||
Sbjct 225617 ATGCCCTCCTTATCCTGGATCTTTGCCTTAA-CGTTATCGATTGTATCAGAGGACTCCAC 225559
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| || | ||| || || ||||||||||| || || || ||||||
Sbjct 225558 CTCGAGGGTGATCGTCTTCCCCGTTAGAGTTTTGACGAAGATCTGCATC 225510
>seq25488
Length=371609
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||||||||| | | || || || || || || ||||| ||||||||||| |||
Sbjct 181559 CCTCCGCGGAGGCGAAGGACGAGGTGGAGGGTCGACTCCTTCTGGATATTATAGTCGGCC 181500
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || ||| || | || || || ||| | || | |||||||||||||| |||
Sbjct 181499 AGAGTACGTCCATCCTCGAGCTGCTTACCGGCGAAGATAAGGCGTTGCTGGTCCGGAGGA 181440
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
|||||||| || || || | | || | | | || | || | ||| ||||| || || ||
Sbjct 181439 ATGCCTTCCTTGTCCTGGA-TCTTGGCCTTAACGTTGTCAATGGTATCGGAGGATTCCAC 181381
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || |||| ||| || || ||||| ||||| || || || ||||||
Sbjct 181380 CTCCAGGGTAATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 181332
>seq15016
Length=583550
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | || || || ||||| |||||||| |||||||| |||||| |
Sbjct 437756 CCCCCACGGAGGCGGAGAACGAGGTGAAGCGTCGATTCCTTCTGGATATTGTAATCGGCG 437697
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| || || | || || || ||| | || || || || || || ||||||
Sbjct 437696 AGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATTAAGCGCTGTTGATCTGGCGGA 437637
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
||||| || ||||| || | |||||| | | || | || | || || || ||||| ||
Sbjct 437636 ATGCCCTCCTTATCCTGGA-TTTTTGCCTTAACGTTGTCGATTGTATCAGAGGACTCCAC 437578
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| || | ||| || || ||||| ||||| || || || ||||||
Sbjct 437577 CTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCATC 437529
>seq40947
Length=4604
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || || || | | ||| || || || || |||||||| |||||||| || ||
Sbjct 1682 ATTCCACCACGAAGGCGGAGCACAAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCA 1623
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| |||| ||| || | || || || ||| | || | | ||||||||||||
Sbjct 1622 GATAGGGTTCGGCCATCCTCAAGCTGCTTACCGGCGAAGATTAGCCTTTGCTGGTCCGGA 1563
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
| |||||||| || || || || || || | || | || | ||||||||| |||
Sbjct 1562 GCGATGCCTTCCTTGTCCTGGATCTTCGACTTCA-CGTTCTCAATGGTGTCGGAGCTCTC 1504
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||| |||| || ||||| || || ||||| ||||| || ||||||
Sbjct 1503 CACCTCGAGTGTAATGGTCTTGCCTGTGAGGGTTTTGACAAAGATCTGCATC 1452
Score = 82.4 bits (90), Expect = 7e-11
Identities = 159/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| || || | | || || || || || || ||||| ||||| || || |||
Sbjct 1226 ATCCCTCCCCGAAGACGAAGAACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAGTCG 1167
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| |||| || || | ||||| || ||| |||||| | |||||||||||
Sbjct 1166 GAGAGGGTTCGGCCGTCCTCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGT 1107
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || || || || || || | |||| || | | || | || | ||||||||| |||
Sbjct 1106 GGGATTCCCTCCTTGTCCTGGA-TTTTGGTCTTAACGTTCTCGATCGTGTCGGAACTCTC 1048
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || || || | || |||||||| || || || || || || ||||||
Sbjct 1047 CACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTAACGAATATCTGCATC 996
>seq14985
Length=335608
Score = 82.4 bits (90), Expect = 7e-11
Identities = 106/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168
|| |||| || | |||||||| || ||||| || ||||| ||||| || || || ||||
Sbjct 170118 TTGTTCCGCCTCTAAGCCTCAAAACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAAT 170177
Query 45169 C-GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCC 45227
| ||| | ||| | ||| ||||| || || || || | ||||||||||| || ||
Sbjct 170178 CCGCTAA-GGTCCGACCATCTTCCAACTGCTTCCCGGCAAAAATCAATCGTTGTTGATCA 170236
Query 45228 GGCGGAATGCCTTCTTTATCTTGA 45251
|| |||||||| || || || |||
Sbjct 170237 GGTGGAATGCCCTCCTTGTCCTGA 170260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451591300783920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |