Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq19607 104 2e-17 seq25488 100 3e-16 seq15016 100 3e-16 seq40947 91.5 1e-13 seq14985 82.4 7e-11 >seq19607 Length=286188 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || ||||| |||||||| |||||||| |||||| | Sbjct 225737 CCCCCACGGAGGCGGAGAACGAGGTGAAGCGTCGATTCCTTCTGGATATTGTAATCGGCG 225678 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || || || || || ||||||||| Sbjct 225677 AGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATTAAGCGCTGTTGATCCGGCGGA 225618 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || ||||| || || ||| || | || | || | || || || ||||| || Sbjct 225617 ATGCCCTCCTTATCCTGGATCTTTGCCTTAA-CGTTATCGATTGTATCAGAGGACTCCAC 225559 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | ||| || || ||||||||||| || || || |||||| Sbjct 225558 CTCGAGGGTGATCGTCTTCCCCGTTAGAGTTTTGACGAAGATCTGCATC 225510 >seq25488 Length=371609 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||||||||| | | || || || || || || ||||| ||||||||||| ||| Sbjct 181559 CCTCCGCGGAGGCGAAGGACGAGGTGGAGGGTCGACTCCTTCTGGATATTATAGTCGGCC 181500 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | || || || ||| | || | |||||||||||||| ||| Sbjct 181499 AGAGTACGTCCATCCTCGAGCTGCTTACCGGCGAAGATAAGGCGTTGCTGGTCCGGAGGA 181440 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || || || | | || | | | || | || | ||| ||||| || || || Sbjct 181439 ATGCCTTCCTTGTCCTGGA-TCTTGGCCTTAACGTTGTCAATGGTATCGGAGGATTCCAC 181381 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || |||| ||| || || ||||| ||||| || || || |||||| Sbjct 181380 CTCCAGGGTAATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 181332 >seq15016 Length=583550 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || ||||| |||||||| |||||||| |||||| | Sbjct 437756 CCCCCACGGAGGCGGAGAACGAGGTGAAGCGTCGATTCCTTCTGGATATTGTAATCGGCG 437697 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || || || || || || |||||| Sbjct 437696 AGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAGATTAAGCGCTGTTGATCTGGCGGA 437637 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || ||||| || | |||||| | | || | || | || || || ||||| || Sbjct 437636 ATGCCCTCCTTATCCTGGA-TTTTTGCCTTAACGTTGTCGATTGTATCAGAGGACTCCAC 437578 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | ||| || || ||||| ||||| || || || |||||| Sbjct 437577 CTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCATC 437529 >seq40947 Length=4604 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | ||| || || || || |||||||| |||||||| || || Sbjct 1682 ATTCCACCACGAAGGCGGAGCACAAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCA 1623 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | || || || ||| | || | | |||||||||||| Sbjct 1622 GATAGGGTTCGGCCATCCTCAAGCTGCTTACCGGCGAAGATTAGCCTTTGCTGGTCCGGA 1563 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 | |||||||| || || || || || || | || | || | ||||||||| ||| Sbjct 1562 GCGATGCCTTCCTTGTCCTGGATCTTCGACTTCA-CGTTCTCAATGGTGTCGGAGCTCTC 1504 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| |||| || ||||| || || ||||| ||||| || |||||| Sbjct 1503 CACCTCGAGTGTAATGGTCTTGCCTGTGAGGGTTTTGACAAAGATCTGCATC 1452 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || || || || || || ||||| ||||| || || ||| Sbjct 1226 ATCCCTCCCCGAAGACGAAGAACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAGTCG 1167 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| || || | ||||| || ||| |||||| | ||||||||||| Sbjct 1166 GAGAGGGTTCGGCCGTCCTCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGT 1107 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || || | |||| || | | || | || | ||||||||| ||| Sbjct 1106 GGGATTCCCTCCTTGTCCTGGA-TTTTGGTCTTAACGTTCTCGATCGTGTCGGAACTCTC 1048 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || |||||||| || || || || || || |||||| Sbjct 1047 CACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTAACGAATATCTGCATC 996 >seq14985 Length=335608 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168 || |||| || | |||||||| || ||||| || ||||| ||||| || || || |||| Sbjct 170118 TTGTTCCGCCTCTAAGCCTCAAAACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAAT 170177 Query 45169 C-GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCC 45227 | ||| | ||| | ||| ||||| || || || || | ||||||||||| || || Sbjct 170178 CCGCTAA-GGTCCGACCATCTTCCAACTGCTTCCCGGCAAAAATCAATCGTTGTTGATCA 170236 Query 45228 GGCGGAATGCCTTCTTTATCTTGA 45251 || |||||||| || || || ||| Sbjct 170237 GGTGGAATGCCCTCCTTGTCCTGA 170260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451591300783920