Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq25504 125 9e-24 seq58380 104 3e-17 seq55201 100 3e-16 seq40021 82.4 9e-11 >seq25504 Length=639989 Score = 125 bits (138), Expect = 9e-24 Identities = 192/273 (70%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| |||||||||||||| || ||||| || || |||||| ||||| Sbjct 367393 AGCAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGACC 367452 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| || || | |||||| | |||||| || ||||| || || ||||||||||| Sbjct 367453 GGGCATTAGCCCTCTCTTCTTGAGCCAGAAGATGGCACAGAAGCTACCGGAGAAGAAGAT 367512 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 ||||| || || || ||||||| | ||||| ||||| || ||| | || | Sbjct 367513 TCCCTCAACGCAAGCAAACGCAAGGATGCGCTCTGCAAATGAATTGGA---GGCGTCGAT 367569 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 ||| | |||||||| ||||| ||| || |||||||||| ||| || | || Sbjct 367570 CCAACGTAGGGCCCACTGAGCCTTGCGGGCGACGCAGGGGACGGTCTCGATGGCATGGAA 367629 Query 127759 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 127791 ||| | || || | | |||||||||||| Sbjct 367630 GAGATGGGATTTCTCACAGGAATCTTTGATGTA 367662 >seq58380 Length=580937 Score = 104 bits (114), Expect = 3e-17 Identities = 194/280 (69%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || || |||||||||||||| || || ||||| | |||||||| | |||||||||| | Sbjct 483147 TCAAAACCATCCATCTCAGTTAAAAGCTGATTCAGAGTTTGTTCTCTTTCATCATTCCCT 483088 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | ||| | | || ||| | || || || |||||||| |||| || || ||| Sbjct 483087 CCTCCAATACCTGTTCCTCGCTGCCTTCCAACAGCATCAATTTCATCAACAAACACAATA 483028 Query 12909 CACGGTTGATTTTC-ACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 || ||| |||||| | | ||| ||| | |||||| |||| |||||| || || Sbjct 483027 CAAGGTGCATTTTCTTTAGCCTTCTTGAAA-AGATCTCGAACTCGTGAGGCACCAACGCC 482969 Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCAC 13026 ||||||||||||||||| | | | | | |||| || ||||| ||| | ||||| Sbjct 482968 AACAAACATCTCCACAAACTCAGATCCTG-AGATTGAGAAAAAGGGAACGCCAGCTTCAC 482910 Query 13027 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | || || || ||| || || ||||| || || || || Sbjct 482909 CAGCAATCGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGG 482870 >seq55201 Length=1221137 Score = 100 bits (110), Expect = 3e-16 Identities = 155/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 ||||||||||| ||||| || || || || || ||||| ||||| ||||| | ||| Sbjct 301427 TGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGACCGGGCATCAAACCG 301368 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 |||||||| | |||||| || || || || |||||||||||| || || || || || Sbjct 301367 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAAATACCTTCAACGCAA 301308 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 ||||| || | | ||||| ||||| | || | |||| ||| || |||| Sbjct 301307 GCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGA---GGCGTCAATCCAGCGCAGCGCC 301251 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||||| ||||| ||| || |||| ||||| ||| || Sbjct 301250 CACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGC 301210 >seq40021 Length=871558 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 || ||||| |||| ||| || |||| || ||||| | ||| ||||||| || || Sbjct 119974 GCAATTGATGCCAAATTGCATACAGCAGTTTCATCGGGACTGGTGAACTCTATTATCTCA 119915 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 ||||||||||||||| ||| ||||| || | ||| |||||||| ||| | || || Sbjct 119914 GTACACAAATTTGAAGACTTTATGGTTCCAAGGTTGTTTTGATTGCTTTTTCTATTGCAA 119855 Query 116551 GCATCCTT 116558 |||||||| Sbjct 119854 GCATCCTT 119847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612948126226320