Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq25504 125 9e-24
seq58380 104 3e-17
seq55201 100 3e-16
seq40021 82.4 9e-11
>seq25504
Length=639989
Score = 125 bits (138), Expect = 9e-24
Identities = 192/273 (70%), Gaps = 3/273 (1%)
Strand=Plus/Plus
Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578
|||||| || ||| |||||||||||||| || ||||| || || |||||| |||||
Sbjct 367393 AGCAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGACC 367452
Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638
||||| || || | |||||| | |||||| || ||||| || || |||||||||||
Sbjct 367453 GGGCATTAGCCCTCTCTTCTTGAGCCAGAAGATGGCACAGAAGCTACCGGAGAAGAAGAT 367512
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698
||||| || || || ||||||| | ||||| ||||| || ||| | || |
Sbjct 367513 TCCCTCAACGCAAGCAAACGCAAGGATGCGCTCTGCAAATGAATTGGA---GGCGTCGAT 367569
Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758
||| | |||||||| ||||| ||| || |||||||||| ||| || | ||
Sbjct 367570 CCAACGTAGGGCCCACTGAGCCTTGCGGGCGACGCAGGGGACGGTCTCGATGGCATGGAA 367629
Query 127759 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 127791
||| | || || | | ||||||||||||
Sbjct 367630 GAGATGGGATTTCTCACAGGAATCTTTGATGTA 367662
>seq58380
Length=580937
Score = 104 bits (114), Expect = 3e-17
Identities = 194/280 (69%), Gaps = 4/280 (1%)
Strand=Plus/Minus
Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848
|| || |||||||||||||| || || ||||| | |||||||| | |||||||||| |
Sbjct 483147 TCAAAACCATCCATCTCAGTTAAAAGCTGATTCAGAGTTTGTTCTCTTTCATCATTCCCT 483088
Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908
| ||| | | || ||| | || || || |||||||| |||| || || |||
Sbjct 483087 CCTCCAATACCTGTTCCTCGCTGCCTTCCAACAGCATCAATTTCATCAACAAACACAATA 483028
Query 12909 CACGGTTGATTTTC-ACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967
|| ||| |||||| | | ||| ||| | |||||| |||| |||||| || ||
Sbjct 483027 CAAGGTGCATTTTCTTTAGCCTTCTTGAAA-AGATCTCGAACTCGTGAGGCACCAACGCC 482969
Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCAC 13026
||||||||||||||||| | | | | | |||| || ||||| ||| | |||||
Sbjct 482968 AACAAACATCTCCACAAACTCAGATCCTG-AGATTGAGAAAAAGGGAACGCCAGCTTCAC 482910
Query 13027 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066
| || || || ||| || || ||||| || || || ||
Sbjct 482909 CAGCAATCGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGG 482870
>seq55201
Length=1221137
Score = 100 bits (110), Expect = 3e-16
Identities = 155/221 (70%), Gaps = 3/221 (1%)
Strand=Plus/Minus
Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591
||||||||||| ||||| || || || || || ||||| ||||| ||||| | |||
Sbjct 301427 TGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGACCGGGCATCAAACCG 301368
Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651
|||||||| | |||||| || || || || |||||||||||| || || || || ||
Sbjct 301367 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAAATACCTTCAACGCAA 301308
Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711
||||| || | | ||||| ||||| | || | |||| ||| || ||||
Sbjct 301307 GCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGA---GGCGTCAATCCAGCGCAGCGCC 301251
Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752
||||| ||||| ||| || |||| ||||| ||| ||
Sbjct 301250 CACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGC 301210
>seq40021
Length=871558
Score = 82.4 bits (90), Expect = 9e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490
|| ||||| |||| ||| || |||| || ||||| | ||| ||||||| || ||
Sbjct 119974 GCAATTGATGCCAAATTGCATACAGCAGTTTCATCGGGACTGGTGAACTCTATTATCTCA 119915
Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550
||||||||||||||| ||| ||||| || | ||| |||||||| ||| | || ||
Sbjct 119914 GTACACAAATTTGAAGACTTTATGGTTCCAAGGTTGTTTTGATTGCTTTTTCTATTGCAA 119855
Query 116551 GCATCCTT 116558
||||||||
Sbjct 119854 GCATCCTT 119847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 612948126226320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |