Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq25488 82.4 5e-11 >seq25488 Length=371609 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || |||||||| ||||||| | ||| |||| || | || || ||| | || Sbjct 181523 TCCTTCTGGATATTATAGTCGGCCAGAGTACGTCCATCCTCGAGCTGCTTACCGGCGAAG 181464 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | || ||||| |||| || | |||||| ||||| || || |||| ||| Sbjct 181463 ATAAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTAA-CGTT 181405 Query 39649 GCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || | || | | |||||| |||| ||||| || || ||||||| ||||| || Sbjct 181404 GTCAATGGTATCGGAGGATTCCACCTCCAGGGTAATCGTCTTCCCCGTTAGGGTTTTCAC 181345 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 181344 GAAGATCTGCAT 181333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347060964498566