Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq55201 154 2e-32 seq25504 149 8e-31 seq58380 145 9e-30 seq44097 96.9 4e-15 >seq55201 Length=1221137 Score = 154 bits (170), Expect = 2e-32 Identities = 313/456 (69%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 ||||||||||| | |||| || || || ||||| ||||| ||||||||||| |||| Sbjct 301282 TTTGCTGAGCGGATTCTCGCTTTCGCTTGCGTTGAAGGTATTTTCTTCTCTGGCAGCTTC 301341 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| || | |||||||||||||| ||| | ||||| |||||| |||||||||||| Sbjct 301342 TGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCCGGTCTCACATTCTCCAACGAG 301401 Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTAT-T 102352 || || |||||||| ||||| ||||| || ||||| || | ||| | || | | Sbjct 301402 CTGATATCTCGTGATGAGGGTCTCCATTGCGACTTTGC-CTG---CCTTTTATATAGTCT 301457 Query 102353 GCGTATTAAACCAACGACT------GAGACTATTCATTCTATTGTTAAGGAAGCCGTTGA 102406 | || || ||| || | |||| ||| |||||| ||| || || || Sbjct 301458 TCTGATCAA--CAA-GATTTCAGAGGAGAGGGTTCGAGAGATTGTTGCGGATGCTGTGGA 301514 Query 102407 GATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGA 102466 ||||||| || || | | ||||| |||||||||||||| | || ||||| | || Sbjct 301515 TATTGAGAGGGAGTTTGTTTGCGATGCACTTCCATGCGCTCTTGTGGGAATGAACGCCGA 301574 Query 102467 AAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCC 102526 ||| | |||||||||| ||| ||||| | || || || || |||| Sbjct 301575 TCTAATGAGCCGCTATATTGAGTTTGTCGCTGATCG--GCTTCTAGGAGCTCTGGGTTAT 301632 Query 102527 TCCAATTTGGA-ACTCCA-AGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGG 102584 ||| ||| | | | ||||||||||||| |||||| ||| || | || Sbjct 301633 GGCAAGTTGTATGGTGTATCAAATCCATTTGACTGGATGGAGCTCATATCACTTCAGGGT 301692 Query 102585 AAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 102620 ||||| || ||||| || |||||||| ||||| ||| Sbjct 301693 AAGACGAATTTCTTTGAGAAGAGGGTCGGGGAATAT 301728 >seq25504 Length=639989 Score = 149 bits (164), Expect = 8e-31 Identities = 130/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 ||| ||||| ||||| || | || ||||| || |||||||| ||||||||||| ||| Sbjct 367555 TTCATTTGCAGAGCGCATCCTTGCGTTTGCTTGCGTTGAGGGAATCTTCTTCTCCGGTAG 367496 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 |||||| || || | |||||||||||| |||| || ||||| |||||| ||||||||| Sbjct 367495 CTTCTGTGCCATCTTCTGGCTCAAGAAGAGAGGGCTAATGCCCGGTCTCACCTTCTCCAA 367436 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| || |||||||||||||| || ||| || ||||| Sbjct 367435 CGAGCTCATATCTCGTGACGAGGGTCTGCACTGTGACTTTGC 367394 >seq58380 Length=580937 Score = 145 bits (160), Expect = 9e-30 Identities = 250/358 (70%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 ||||||||||||||||| || |||||||| || | ||||||||| | |||||||||| || Sbjct 483147 TCAAAACCATCCATCTCAGTTAAAAGCTGATTCAGAGTTTGTTCTCTTTCATCATTCCCT 483088 Query 16032 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | ||| | | || ||| |||| || |||||||| ||||||| || || || Sbjct 483087 CCTCCAATACCTGTTCCTCGCTGCCTTCCAACAGCATCAATTTCATCAACAAACACAATA 483028 Query 16092 CATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 || ||| |||||| || | ||| ||| ||||| || || || ||| || || || Sbjct 483027 CAAGGTGCATTTTCTTTAGCCTTCTTGAAA-AGATCTCGAACTCGTGAGGCACCAACGCC 482969 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 |||||||||||||||||| | | | | | |||| || ||||| || || ||||| Sbjct 482968 AACAAACATCTCCACAAACTCAGATCCTG-AGATTGAGAAAAAGGGAACGCCAGCTTCAC 482910 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | ||||| || ||| || |||||||| || ||||| || ||| ||| || ||| Sbjct 482909 CAGCAATCGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGGAGGACCAATGAGAAGAACAC 482850 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 || || || || ||| | || | || || |||| ||| ||||| ||||| Sbjct 482849 CTTTAGGTATACGAGCACCAATAGCAGTAAACCTTTCTGGTTTCTTCAGAAACTCCAC 482792 >seq44097 Length=433404 Score = 96.9 bits (106), Expect = 4e-15 Identities = 218/322 (68%), Gaps = 12/322 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| ||||| |||||||| || || | || |||||| | Sbjct 154965 AAACCCATCCATCTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCGTCATTCCC--- 155021 Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 |||| ||||| | | ||| |||| || ||||||||||||||||| || || || Sbjct 155022 ACCACCAAGCCCAGCCCCTCTCTGCCTTCCAACTGCATCAATCTCATCAATAAAAACAAT 155081 Query 16091 GCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 || || |||||| | || ||||| | ||||| || | | || || || Sbjct 155082 ACAAGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCCTCACCCTCGAAGCTCCAACT 155139 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 |||||||| | |||||||| | || || | ||| | ||| || ||| | || Sbjct 155140 CCAACAAAAAGTTCCACAAACTCTGAAGCAGCACACGAAAAGAACGGCACACCGGCCTCG 155199 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCG-CGAGGAGGGC 16267 || |||| |||| ||| || || ||||| || || || || | |||| | | ||| Sbjct 155200 CCGGCAACCGCTCTGGCTAGCAGTGTCTTCCCGGTTCCCGG-TGGCCCGACCAAAAGGCA 155258 Query 16268 ACCTCGTGGAATCTTGGCGCCA 16289 |||| |||||||| || ||| Sbjct 155259 ACCTTTGGGAATCTTAGCACCA 155280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620176732969440