Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq25504 122 1e-22 seq55201 109 6e-19 >seq25504 Length=639989 Score = 122 bits (134), Expect = 1e-22 Identities = 283/423 (67%), Gaps = 8/423 (2%) Strand=Plus/Plus Query 119319 AGAAGACGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATG 119378 ||||||||||||| ||| |||| || || | | ||| || | |||||| || | Sbjct 367217 AGAAGACGATCGGCAACAAACTCTATGTACTGGCTCATGAGATCAGCATTCATCCCCACA 367276 Query 119379 AGATTACACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACG 119438 ||| ||| |||||||||||| || ||| | | |||| || || ||||| || | Sbjct 367277 AGAGCACAGGGGAGAGCATCGCAGACGAACTCCCTCTCTATATCGACAGCATCGGAAATA 367336 Query 119439 ATGGAGTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAG--TTTAAACAACTCTACGG 119496 || ||| | || || | || || | | ||| | || | || | | | Sbjct 367337 ATCTCTCGAACCCTATCCTCAGAGAGCTTATTGTTGAGGAGGCTGTAGAGAAGGCAA--G 367394 Query 119497 CAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAG 119556 |||| || || || || || || ||||| |||||||| || |||| || || | Sbjct 367395 CAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGACCGG 367454 Query 119557 GCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGC 119616 |||| || ||||| ||||| ||||| ||||||||||| || || || || |||||||| | Sbjct 367455 GCATTAGCCCTCTCTTCTTGAGCCAGAAGATGGCACAGAAGCTACCGGAGAAGAAGATTC 367514 Query 119617 CCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAA--AGGTCGAGACTTGTCGAACCA 119674 |||| || || || || || | | ||||| ||||| | | ||| | ||||| ||| Sbjct 367515 CCTCAACGCAAGCAAACGCAAGGATGCGCTCTGCAAATGAATTGGAGGC--GTCGATCCA 367572 Query 119675 CTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 || ||||| | ||||| || | | ||||||||| || | |||||| | ||| || Sbjct 367573 ACGTAGGGCCCACTGAGCCTTGCGGGCGACGCAGGGGACGGTCTCGATGGCATGGAAGAG 367632 Query 119735 TTG 119737 || Sbjct 367633 ATG 367635 >seq55201 Length=1221137 Score = 109 bits (120), Expect = 6e-19 Identities = 347/531 (65%), Gaps = 9/531 (2%) Strand=Plus/Minus Query 119207 ATAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCAT 119266 ||| || || |||||||| || ||||||||||||||||| | ||||| ||| ||||| Sbjct 301728 ATATTCCCCGACCCTCTTCTCAAAGAAATTCGTCTTACCCTGAAGTGATATGAGCTCCAT 301669 Query 119267 AAAGTCAAAAGGATTTT-TGGAGT-TCCAGATTGGTGGTTGACCAACTTGTTTCAGAAGA 119324 ||||||| |||||| | | | || ||| | ||| | | ||||| Sbjct 301668 CCAGTCAAATGGATTTGATACACCATACAACTTGCCA--TAACCCAGAGCTCCTAGAAGC 301611 Query 119325 CGATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTA 119384 ||||| | |||| |||| ||||| | ||| || | ||||| || | ||| Sbjct 301610 CGATCAGCGACAAACTCAATATAGCGGCTCATTAGATCGGCGTTCATTCCCACAAGAGCG 301551 Query 119385 CACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAG 119444 || || || |||||| | || | | |||| || |||||||| || || || Sbjct 301550 CATGGAAGTGCATCGCAAACAAACTCCCTCTCAATATCCACAGCATCCGCAACAATCTCT 301491 Query 119445 TGAATAGTTTCTGTCGATGGTTTGTTTCTCA--AGAGTTTAAACAACTCTACGGCAAATT 119502 ||| | || || ||||| ||| ||| | || | || | |||||| | Sbjct 301490 CGAACCCTCTCCTCTGAAATCTTGTTGATCAGAAGACTATATAAAAGGCA--GGCAAAGT 301433 Query 119503 CTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGA 119562 | ||| || || ||||| ||||| || ||||| || ||| || || ||||| | Sbjct 301432 CGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGACCGGGCATCA 301373 Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622 || | ||||| ||||| |||||||| || || || ||||| ||||| || || || | Sbjct 301372 AACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAAATACCTTCAA 301313 Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAG 119682 | || |||||||||| | ||||||||||| | ||| ||| | ||| || | Sbjct 301312 CGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGAGGCGTCAATCCAGCGCAGCG 301253 Query 119683 CCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAA 119733 |||| | ||||| || | | |||||||| || | |||||| |||||| Sbjct 301252 CCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGC-ACGAAAA 301203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588439280895600