Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq58380 149 7e-31
seq44097 96.9 4e-15
seq25504 96.9 4e-15
seq40021 87.8 2e-12
seq55201 84.2 3e-11
>seq58380
Length=580937
Score = 149 bits (164), Expect = 7e-31
Identities = 202/279 (72%), Gaps = 2/279 (1%)
Strand=Plus/Minus
Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338
||||||||||||||||| || ||||| || || | ||||||||| | |||||||||| ||
Sbjct 483147 TCAAAACCATCCATCTCAGTTAAAAGCTGATTCAGAGTTTGTTCTCTTTCATCATTCCCT 483088
Query 9339 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
| ||| | | || ||| |||| || |||||||| ||||||| || ||||||
Sbjct 483087 CCTCCAATACCTGTTCCTCGCTGCCTTCCAACAGCATCAATTTCATCAACAAACACAATA 483028
Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458
|| ||| |||||| || | | || ||||| ||||| | | ||| || || |||
Sbjct 483027 CAAGGTGCATTTTCTTTAGCCTTCTTGAAAAGATCTCGAACTCGTGAGGCACCAACGCCA 482968
Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9517
||||||||||||||||| | | | | | |||| || ||||| || || ||||||
Sbjct 482967 ACAAACATCTCCACAAACTCAGATCCTG-AGATTGAGAAAAAGGGAACGCCAGCTTCACC 482909
Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTgg 9556
||||| || ||| || |||||||| || ||||| ||
Sbjct 482908 AGCAATCGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGG 482870
>seq44097
Length=433404
Score = 96.9 bits (106), Expect = 4e-15
Identities = 192/281 (68%), Gaps = 10/281 (4%)
Strand=Plus/Plus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| ||||||||||| ||||| || || |||||||| || || | || |||||| |
Sbjct 154965 AAACCCATCCATCTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCGTCATTCCCACC 155024
Query 9341 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAAT 9397
|||| ||||| | | ||| |||| || ||||||||||||||||| || |||||
Sbjct 155025 ---ACCAAGCCCAGCCCCTCTCTGCCTTCCAACTGCATCAATCTCATCAATAAAAACAAT 155081
Query 9398 ACATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455
||| || |||||| || | ||||| | ||| | ||||| || || ||
Sbjct 155082 ACAAGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCCTCACCCTCGAAGCTCCAACT 155139
Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515
|||||||| | |||||||| | || || | ||| | ||| || ||| | ||
Sbjct 155140 CCAACAAAAAGTTCCACAAACTCTGAAGCAGCACACGAAAAGAACGGCACACCGGCCTCG 155199
Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTgg 9556
|| |||| |||| ||| || || ||||| || || || ||
Sbjct 155200 CCGGCAACCGCTCTGGCTAGCAGTGTCTTCCCGGTTCCCGG 155240
>seq25504
Length=639989
Score = 96.9 bits (106), Expect = 4e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333
||||| || ||| |||||||| || || || || || || || |||||| || ||
Sbjct 367394 GCAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGACCG 367453
Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393
||||| || || | |||||| | ||| | || || ||||| ||||||||||||||
Sbjct 367454 GGCATTAGCCCTCTCTTCTTGAGCCAGAAGATGGCACAGAAGCTACCGGAGAAGAAGATT 367513
Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434
||||| || || |||||||||| | |||||| || || ||
Sbjct 367514 CCCTCAACGCAAGCAAACGCAAGGATGCGCTCTGCAAATGA 367554
>seq40021
Length=871558
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522
|| ||||||||||||||||| ||||| || ||||| | ||| |||||| || ||
Sbjct 119974 GCAATTGATGCCAAATTGCATACAGCAGTTTCATCGGGACTGGTGAACTCTATTATCTCA 119915
Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582
|||||||| || ||| ||| || || || | || ||||| || || ||| | |||||
Sbjct 119914 GTACACAAATTTGAAGACTTTATGGTTCCAAGGTTGTTTTGATTGCTTTTTCTATTGCAA 119855
Query 106583 GCATCCTT 106590
||||||||
Sbjct 119854 GCATCCTT 119847
>seq55201
Length=1221137
Score = 84.2 bits (92), Expect = 3e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || |||||||||||||| || || || || || || ||||| || ||
Sbjct 301440 GGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGACC 301381
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392
||||| | ||| |||||||| | ||| | || |||||||| || |||||||| ||
Sbjct 301380 GGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAAAT 301321
Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431
||| || || || || || || | || ||||| || ||
Sbjct 301320 ACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAA 301282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589443165246480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |