Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq58380 149 7e-31 seq44097 96.9 4e-15 seq25504 96.9 4e-15 seq40021 87.8 2e-12 seq55201 84.2 3e-11 >seq58380 Length=580937 Score = 149 bits (164), Expect = 7e-31 Identities = 202/279 (72%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338 ||||||||||||||||| || ||||| || || | ||||||||| | |||||||||| || Sbjct 483147 TCAAAACCATCCATCTCAGTTAAAAGCTGATTCAGAGTTTGTTCTCTTTCATCATTCCCT 483088 Query 9339 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | ||| | | || ||| |||| || |||||||| ||||||| || |||||| Sbjct 483087 CCTCCAATACCTGTTCCTCGCTGCCTTCCAACAGCATCAATTTCATCAACAAACACAATA 483028 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || ||| |||||| || | | || ||||| ||||| | | ||| || || ||| Sbjct 483027 CAAGGTGCATTTTCTTTAGCCTTCTTGAAAAGATCTCGAACTCGTGAGGCACCAACGCCA 482968 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9517 ||||||||||||||||| | | | | | |||| || ||||| || || |||||| Sbjct 482967 ACAAACATCTCCACAAACTCAGATCCTG-AGATTGAGAAAAAGGGAACGCCAGCTTCACC 482909 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTgg 9556 ||||| || ||| || |||||||| || ||||| || Sbjct 482908 AGCAATCGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGG 482870 >seq44097 Length=433404 Score = 96.9 bits (106), Expect = 4e-15 Identities = 192/281 (68%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| || || |||||||| || || | || |||||| | Sbjct 154965 AAACCCATCCATCTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCGTCATTCCCACC 155024 Query 9341 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAAT 9397 |||| ||||| | | ||| |||| || ||||||||||||||||| || ||||| Sbjct 155025 ---ACCAAGCCCAGCCCCTCTCTGCCTTCCAACTGCATCAATCTCATCAATAAAAACAAT 155081 Query 9398 ACATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 ||| || |||||| || | ||||| | ||| | ||||| || || || Sbjct 155082 ACAAGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCCTCACCCTCGAAGCTCCAACT 155139 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515 |||||||| | |||||||| | || || | ||| | ||| || ||| | || Sbjct 155140 CCAACAAAAAGTTCCACAAACTCTGAAGCAGCACACGAAAAGAACGGCACACCGGCCTCG 155199 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTgg 9556 || |||| |||| ||| || || ||||| || || || || Sbjct 155200 CCGGCAACCGCTCTGGCTAGCAGTGTCTTCCCGGTTCCCGG 155240 >seq25504 Length=639989 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| || || || || || || || |||||| || || Sbjct 367394 GCAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGACCG 367453 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || | |||||| | ||| | || || ||||| |||||||||||||| Sbjct 367454 GGCATTAGCCCTCTCTTCTTGAGCCAGAAGATGGCACAGAAGCTACCGGAGAAGAAGATT 367513 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 ||||| || || |||||||||| | |||||| || || || Sbjct 367514 CCCTCAACGCAAGCAAACGCAAGGATGCGCTCTGCAAATGA 367554 >seq40021 Length=871558 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || ||||||||||||||||| ||||| || ||||| | ||| |||||| || || Sbjct 119974 GCAATTGATGCCAAATTGCATACAGCAGTTTCATCGGGACTGGTGAACTCTATTATCTCA 119915 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 |||||||| || ||| ||| || || || | || ||||| || || ||| | ||||| Sbjct 119914 GTACACAAATTTGAAGACTTTATGGTTCCAAGGTTGTTTTGATTGCTTTTTCTATTGCAA 119855 Query 106583 GCATCCTT 106590 |||||||| Sbjct 119854 GCATCCTT 119847 >seq55201 Length=1221137 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || |||||||||||||| || || || || || || ||||| || || Sbjct 301440 GGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGACC 301381 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||| | ||| |||||||| | ||| | || |||||||| || |||||||| || Sbjct 301380 GGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAAAT 301321 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 ||| || || || || || || | || ||||| || || Sbjct 301320 ACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAA 301282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589443165246480