Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq38797 116 2e-21 seq41242 111 1e-19 seq40947 93.3 3e-14 >seq38797 Length=1288649 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||||||||||| ||| | || | || || |||||||| |||||||| Sbjct 629637 TCTTTCTGAATGTTATAGTCCGCAAGAGTGCGGCCGTCCTCAAGCTGTTTACCGGCAAAG 629578 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | |||||||||||| ||||| || ||| Sbjct 629577 ATAAGCCTTTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTTACGTTG 629518 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| || |||||||| ||||| ||||||||| Sbjct 629517 TCAATTGTGTCCGAGCTCTCCACCTCCAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACA 629458 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 629457 AATATTTGCATA 629446 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | | || ||||||| || || || |||||||| ||||||| Sbjct 629217 CCTCCCCTCAGACGGAGGACTAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCCGCC 629158 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||| || ||||||||||| || | || ||||| | || Sbjct 629157 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAATATCAGCCTCTGTTGGTCCGGGGGG 629098 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| || ||| | || | ||| | |||||| Sbjct 629097 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACC 629038 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || ||||||||||| ||||||||||| Sbjct 629037 TCTAAGGTGATGGTCTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 628991 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | | ||||| || | ||| || ||||| ||||| || || | | Sbjct 628989 CCTCCCCTCAGACGGAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 628930 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||| || |||||||| || || | |||||||| | || Sbjct 628929 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 628870 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| ||||| || ||| | || | ||| | |||||| Sbjct 628869 ATACCCTCTTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACC 628810 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || || || || ||||||||||| || ||||||||||| Sbjct 628809 TCTAGGGTGATCGTCTTGCCAGTGAGAGTCTTTACGAAGATCTGCAT 628763 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| |||||||| ||||| ||||| | | | | ||| | || || Sbjct 629428 AACAAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAGGTGCGTCCGTCCTC 629369 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || ||||| || || | || |||||| | || | |||||||| || Sbjct 629368 AAGTTGCTTGCCCGCAAAGATAAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTATCCTG 629309 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | || | || | ||||| || | ||| ||||| || Sbjct 629308 GATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTCTT 629249 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| ||||| |||||||| ||||||||||| Sbjct 629248 TCCAGTGAGCGTCTTCACGAAGATCTGCAT 629219 >seq41242 Length=195047 Score = 111 bits (122), Expect = 1e-19 Identities = 146/197 (74%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || || || | |||| | || |||| || ||||||||||| || || Sbjct 170968 TTCCTTCTGAATATTGTAATCTGCAAGGGTGCGACCATCCTCAAGCTGTTTTCCAGCGAA 171027 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 ||||| | ||||| ||| |||| | |||||||||||| ||||| ||||| | Sbjct 171028 GATTAGCCTCTGCTGATCTGGCGGGATCCCCTCCTTGTCCTGGATCTTTGCCTTGAC--A 171085 Query 34910 TGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | ||||||| | ||| || ||| || || | ||| ||||| ||||| || || |||| Sbjct 171086 T--TATCGATGGTGTCCGAGCTCTCTACTTCTAAGGTGATGGTCTTTCCAGTAAGCGTCT 171143 Query 34966 TCACAAAGATCTGCATA 34982 ||||||| || |||||| Sbjct 171144 TCACAAATATTTGCATA 171160 Score = 100 bits (110), Expect = 2e-16 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || |||||||||||||| | |||| | || |||| || ||||| || || ||||| Sbjct 171424 TTCCTTTTGAATGTTATAGTCAGCAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 171483 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| ||||||||| | || | ||||||||||| ||||| || || | Sbjct 171484 GATGAGTCTTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGTATCTTAGCCTTTAC--A 171541 Query 34910 TGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| | ||| || ||| || || | ||| || || ||||| ||||| |||| Sbjct 171542 T--TGTCGATGGTGTCCGAGCTCTCCACCTCAAGGGTGATTGTCTTTCCAGTGAGGGTCT 171599 Query 34966 TCACAAAGATCTGCAT 34981 | ||||| |||||||| Sbjct 171600 TGACAAATATCTGCAT 171615 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || ||||| || ||||| | ||| | || |||| || ||||||||||| ||||| Sbjct 146704 TTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAA 146763 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| ||| | || | ||||| ||||| ||||| || || Sbjct 146764 GATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCAC--- 146820 Query 34910 TGCTATCGATT-CACCGG---CCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | |||| ||| | ||| ||| || || | || ||||| |||||||| ||||||| Sbjct 146821 -GTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCT 146879 Query 34966 TCACAAAGATCTGCATA 34982 ||||||| ||||||||| Sbjct 146880 TCACAAAAATCTGCATA 146896 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || ||||| || ||||| | ||| | || |||| || ||||||||||| ||||| Sbjct 151868 TTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAA 151927 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| ||| | || | ||||| ||||| ||||| || || Sbjct 151928 GATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCAC--- 151984 Query 34910 TGCTATCGATT-CACCGG---CCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | |||| ||| | ||| ||| || || | || ||||| |||||||| ||||||| Sbjct 151985 -GTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCT 152043 Query 34966 TCACAAAGATCTGCATA 34982 ||||||| ||||||||| Sbjct 152044 TCACAAAAATCTGCATA 152060 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | | ||| | ||| | |||| || ||||| |||||||| || | | Sbjct 147125 CCTCCCCTGAGACGAAGAACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCA 147184 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || || ||||| || |||| ||||||||| | || Sbjct 147185 AGAGTACGCCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 147244 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || |||||| || ||| | || | || |||||| Sbjct 147245 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCGGAACTCTCAACC 147304 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || || || || ||||| || ||||| ||||||||||| Sbjct 147305 TCAAGGGTGATCGTCTTCCCAGTGAGGGTTTTCACGAAGATCTGCAT 147351 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||| | | | ||| | ||| | |||| || ||||| |||||||| || | | Sbjct 152289 CCTCCCCTGAGACGAAGAACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCA 152348 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || || ||||| || |||| ||||||||| | || Sbjct 152349 AGAGTACGCCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 152408 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || |||||| || ||| | || | || |||||| Sbjct 152409 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCGGAACTCTCAACC 152468 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| || || || || ||||| || ||||| ||||||||||| Sbjct 152469 TCAAGGGTGATCGTCTTCCCAGTGAGGGTTTTCACGAAGATCTGCAT 152515 >seq40947 Length=4604 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||| ||||| || || ||||| || ||| |||| |||| || ||||| Sbjct 1656 GTGAAGGGTGGATTCCTTCTGGATATTGTAGTCAGATAGGGTTCGGCCATCCTCAAGCTG 1597 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || ||||| || ||||| | ||||||||| | | | || |||||||| ||||| Sbjct 1596 CTTACCGGCGAAGATTAGCCTTTGCTGGTCCGGAGCGATGCCTTCCTTGTCCTGGATCTT 1537 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | || ||| | || | || | ||| || |||| || ||||| || || || Sbjct 1536 CGACTTCACGTTCTCAATGGTGTCGGAGCTCTCCACCTCGAGTGTAATGGTCTTGCCTGT 1477 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || |||||||||||||| Sbjct 1476 GAGGGTTTTGACAAAGATCTGCAT 1453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324345165278256