Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq40021 114 1e-20
seq2987 105 8e-18
>seq40021
Length=871558
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||||||||| | ||| | ||||||| ||| |||| | || |||||| || || |||
Sbjct 118229 CCTCCTTGATCAACATAGCGAGCAGTATCATTAAAAACCCGTAGCATTGGAACTATGCCA 118170
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
||||| | |||||| || || ||| ||||| ||| | || | || || || ||
Sbjct 118169 TTTGAAACACCATTTGTCCCACGAATGTAACTCCCAGTGGCACGAATGTTGTGGATGGAG 118110
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| || || ||||| || ||| ||||| ||||||| ||| | ||||||||| |||
Sbjct 118109 ACGCCAATTCCACCAGCAGATTTGCTTATTATAGCACACTCTTTTAAGGTATCATATATT 118050
Query 48540 CCTTCTATACTATCATCTATCAT 48562
|| || || ||||||||| ||||
Sbjct 118049 CCCTCAATGCTATCATCTTTCAT 118027
>seq2987
Length=13944
Score = 105 bits (116), Expect = 8e-18
Identities = 148/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418
||| |||||||| | ||| | ||||||| ||| | |||| ||||| || ||||||||
Sbjct 1681 ACCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACC 1740
Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478
||||||| | ||||| ||||| || ||||||||| | || | ||||| || |||
Sbjct 1741 ATTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGA 1800
Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC-CGTTTAAGGGTATCATAAA 48537
| ||| || || || || || || | |||||| | ||||| ||||||||||
Sbjct 1801 CACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAA-AGTATCATAAA 1859
Query 48538 TTCCTTCTATACTATCATCTATCAT 48562
| || || || ||||||||| ||||
Sbjct 1860 TCCCATCAATGCTATCATCTTTCAT 1884
Score = 102 bits (112), Expect = 9e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
||| |||| ||| || | || || || ||||| |||||||| || || | ||| ||
Sbjct 1996 AGTGCCTGCATTGAAGAGGGTAGGGGAGGCATGTGTAAACCATCGCTGAGACATCAAATT 2055
Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718
|||||||| || |||| || ||||| || || || || | ||| || | ||| ||
Sbjct 2056 ATATGTTTTTATTGCAGACTCAATATCATCTTTGTGGATCCCAACAGAAACCCTCATCAA 2115
Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778
||| | ||||||||||| |||| || | | ||||||||| || ||| | || |
Sbjct 2116 CATGTGCTGAGGTCTTTCCACAACCTTCCCAGAAACTTTCAAAAGGTAGGATCTCTCAAG 2175
Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827
||||||||||||||||| | || ||| || ||||| ||||||
Sbjct 2176 CGTTTTAAAACCAAAATAATCATAGTCAAAATCCCGATCATATATAATT 2224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561596564303280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |