Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq40021 114 1e-20 seq2987 105 8e-18 >seq40021 Length=871558 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| ||| |||| | || |||||| || || ||| Sbjct 118229 CCTCCTTGATCAACATAGCGAGCAGTATCATTAAAAACCCGTAGCATTGGAACTATGCCA 118170 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 ||||| | |||||| || || ||| ||||| ||| | || | || || || || Sbjct 118169 TTTGAAACACCATTTGTCCCACGAATGTAACTCCCAGTGGCACGAATGTTGTGGATGGAG 118110 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | || || ||||| || ||| ||||| ||||||| ||| | ||||||||| ||| Sbjct 118109 ACGCCAATTCCACCAGCAGATTTGCTTATTATAGCACACTCTTTTAAGGTATCATATATT 118050 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || ||||||||| |||| Sbjct 118049 CCCTCAATGCTATCATCTTTCAT 118027 >seq2987 Length=13944 Score = 105 bits (116), Expect = 8e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | ||| | ||||||| ||| | |||| ||||| || |||||||| Sbjct 1681 ACCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACC 1740 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||||||| | ||||| ||||| || ||||||||| | || | ||||| || ||| Sbjct 1741 ATTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGA 1800 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC-CGTTTAAGGGTATCATAAA 48537 | ||| || || || || || || | |||||| | ||||| |||||||||| Sbjct 1801 CACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAA-AGTATCATAAA 1859 Query 48538 TTCCTTCTATACTATCATCTATCAT 48562 | || || || ||||||||| |||| Sbjct 1860 TCCCATCAATGCTATCATCTTTCAT 1884 Score = 102 bits (112), Expect = 9e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| |||| ||| || | || || || ||||| |||||||| || || | ||| || Sbjct 1996 AGTGCCTGCATTGAAGAGGGTAGGGGAGGCATGTGTAAACCATCGCTGAGACATCAAATT 2055 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 |||||||| || |||| || ||||| || || || || | ||| || | ||| || Sbjct 2056 ATATGTTTTTATTGCAGACTCAATATCATCTTTGTGGATCCCAACAGAAACCCTCATCAA 2115 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||||||||||| |||| || | | ||||||||| || ||| | || | Sbjct 2116 CATGTGCTGAGGTCTTTCCACAACCTTCCCAGAAACTTTCAAAAGGTAGGATCTCTCAAG 2175 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 ||||||||||||||||| | || ||| || ||||| |||||| Sbjct 2176 CGTTTTAAAACCAAAATAATCATAGTCAAAATCCCGATCATATATAATT 2224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561596564303280