Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq41242 140 3e-28 seq19607 132 4e-26 seq15016 132 4e-26 seq40947 123 2e-23 seq25488 87.8 1e-12 >seq41242 Length=195047 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | |||||||||||||| || || || ||||| ||||| Sbjct 172073 CCTCCCCTAAGACGAAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCA 172132 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | | || ||||| ||||| || ||||| |||| | ||| ||||| || || Sbjct 172133 AGGGTGCGGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGG 172192 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || ||||| || || || ||| ||| | || | ||||| || | |||||| Sbjct 172193 ATGCCCTCCTTATCCTGGATCTTAGCTTTCACATTATCGATGGTGTCGGAGCTCTCCACT 172252 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || |||||||| | ||||| ||||| |||||||| Sbjct 172253 TCAAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 172299 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| |||||||| ||||| ||||| || ||||| || || | || | | | || ||| Sbjct 171179 ACTAGGTGAAGGGTCGATTCCTTTTGAATGTTGTAGTCTGCCAGGGTACGGCCGTCCTCC 171238 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || ||||||||||| | || || ||||| || ||||| || || || || Sbjct 171239 AGCTGCTTGCCGGCAAATATCAACCTTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 171298 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| | || | || ||||| | ||||| ||||| |||| ||||| Sbjct 171299 ATTTTGGCCTTCACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATGGTTTTT 171358 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 171359 CCAGTGAGGGTCTTGACAAAGATCTGCAT 171387 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||||||||| ||||| |||||||| || || | ||| | | |||| || | || Sbjct 146693 TGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGT 146752 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| ||||| || |||||||| ||||| || || || ||| Sbjct 146753 TTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTT 146812 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | || || || | |||||||| | ||||| || || || || Sbjct 146813 GCCTTCACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTA 146872 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || ||||| |||||||| Sbjct 146873 AGAGTCTTCACAAAAATCTGCAT 146895 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||||||||| ||||| |||||||| || || | ||| | | |||| || | || Sbjct 151857 TGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGT 151916 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | ||| ||||| || |||||||| ||||| || || || ||| Sbjct 151917 TTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTT 151976 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | || || || | |||||||| | ||||| || || || || Sbjct 151977 GCCTTCACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTA 152036 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || ||||| |||||||| Sbjct 152037 AGAGTCTTCACAAAAATCTGCAT 152059 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || ||||| || ||||| || || | || | | |||| || | ||| Sbjct 171869 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGC 171928 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| | ||| || || || |||||||| || ||||| || || || Sbjct 171929 TTGCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTA 171988 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | ||||| ||||| |||| || ||||| || Sbjct 171989 GCCTTCACGTTATCGATTGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCTGTG 172048 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 172049 AGGGTCTTGACGAAAATCTGCAT 172071 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | || | ||| ||||| ||||| ||||| || || || || || Sbjct 171389 CCACCCCTAAGACGAAGCACAAGATGGAGGGTGGATTCCTTTTGAATGTTATAGTCAGCA 171448 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || ||||| || | | || || || || || Sbjct 171449 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGGTCCGGGGGG 171508 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || || |||||| | || | ||||| || | ||||| Sbjct 171509 ATGCCCTCCTTGTCCTGTATCTTAGCCTTTACATTGTCGATGGTGTCCGAGCTCTCCACC 171568 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || || || || | || || |||||||||||||| Sbjct 171569 TCAAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACAAATATCTGCAT 171615 >seq19607 Length=286188 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || ||||| || || |||||||||||||||| || | | | || || | ||| Sbjct 225713 TGAAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGC 225654 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || || ||||||||||| ||||||||||| || ||||| || || ||| Sbjct 225653 TTCCCGGCGAAGATTAAGCGCTGTTGATCCGGCGGAATGCCCTCCTTATCCTGGATCTTT 225594 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | || ||||| | ||||| || || |||| ||| || || ||| Sbjct 225593 GCCTTAACGTTATCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTT 225534 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | |||||| || || |||||||| Sbjct 225533 AGAGTTTTGACGAAGATCTGCAT 225511 >seq15016 Length=583550 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || ||||| || || |||||||||||||||| || | | | || || | ||| Sbjct 437732 TGAAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGC 437673 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || || ||||||||||| ||||||||||| || ||||| || |||||| Sbjct 437672 TTCCCGGCGAAGATTAAGCGCTGTTGATCTGGCGGAATGCCCTCCTTATCCTGGATTTTT 437613 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | || ||||| | ||||| || || |||| ||| || || ||| Sbjct 437612 GCCTTAACGTTGTCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTT 437553 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 437552 AGGGTTTTGACGAAGATCTGCAT 437530 >seq40947 Length=4604 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| |||||||| ||||||||||| || || | || | | | || || | ||| Sbjct 1883 TGAAGGGTTGATTCTTTCTGTATATTGTAGTCCGCAAGCGTGCGGCCGTCCTCAAGCTGC 1824 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| || | | || ||||| |||||||| || || ||||||||||| || Sbjct 1823 TTACCAGCAAAGATGAGCCTTTGCTGATCCGGCGGAATCCCCTCCTTATCTTGAATCTTC 1764 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || || || | ||||| || || |||| |||||| || || Sbjct 1763 GACTTCACATTCTCAATTGTATCCGAGCTCTCCACGTCCAGGGTGATCGTTTTACCAGTA 1704 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || ||||| |||||||| Sbjct 1703 AGAGTCTTAACAAAAATCTGCAT 1681 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| | || |||||||| || || || || ||||| |||| | Sbjct 1223 CCTCCCCGAAGACGAAGAACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1164 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | | || || | || || || || ||||||| | ||| || || || || Sbjct 1163 AGGGTTCGGCCGTCCTCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGG 1104 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || ||||| || || | || | ||||| || | ||||| Sbjct 1103 ATTCCCTCCTTGTCCTGGATTTTGGTCTTAACGTTCTCGATCGTGTCGGAACTCTCCACC 1044 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || |||||||| | || || || ||||||||||| Sbjct 1043 TCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTAACGAATATCTGCAT 997 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | ||| | || || || ||||| || || || |||||||||||| Sbjct 1451 CCTCCCCTGAGACGGAGAACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCG 1392 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | | || || | |||||| || ||||| |||| | ||| || || || || Sbjct 1391 AGGGTGCGGCCGTCCTCAAGTTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGG 1332 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || ||||| || || | || | ||||| || | || || Sbjct 1331 ATGCCCTCCTTGTCCTGGATTTTGGACTTAACGTTCTCGATGGTGTCCGAACTCTCTACG 1272 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 ||||| || | || || || || | ||| || | || |||||||| | | |||||| Sbjct 1271 TCAAGGGTAATAGTCTTCCCTGTGAGAGTCTTGATGAAGATCTGCATCCCTCCCCGAAGA 1212 >seq25488 Length=371609 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || ||||| || ||||| | ||| | |||| || | ||| Sbjct 181535 TGGAGGGTCGACTCCTTCTGGATATTATAGTCGGCCAGAGTACGTCCATCCTCGAGCTGC 181476 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| || || || | || || || || || ||||||||||| || || || || || Sbjct 181475 TTACCGGCGAAGATAAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTG 181416 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | || || || | |||||| || || || | ||| || || ||| Sbjct 181415 GCCTTAACGTTGTCAATGGTATCGGAGGATTCCACCTCCAGGGTAATCGTCTTCCCCGTT 181356 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 181355 AGGGTTTTCACGAAGATCTGCAT 181333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395926309366014