Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq41242 140 3e-28
seq19607 132 4e-26
seq15016 132 4e-26
seq40947 123 2e-23
seq25488 87.8 1e-12
>seq41242
Length=195047
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| || | ||| | || | |||||||||||||| || || || ||||| |||||
Sbjct 172073 CCTCCCCTAAGACGAAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCA 172132
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | | | || ||||| ||||| || ||||| |||| | ||| ||||| || ||
Sbjct 172133 AGGGTGCGGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGG 172192
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
||||| || ||||| || || || ||| ||| | || | ||||| || | ||||||
Sbjct 172193 ATGCCCTCCTTATCCTGGATCTTAGCTTTCACATTATCGATGGTGTCGGAGCTCTCCACT 172252
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| |||| || |||||||| | ||||| ||||| ||||||||
Sbjct 172253 TCAAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 172299
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|||| |||||||| ||||| ||||| || ||||| || || | || | | | || |||
Sbjct 171179 ACTAGGTGAAGGGTCGATTCCTTTTGAATGTTGTAGTCTGCCAGGGTACGGCCGTCCTCC 171238
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||| || ||||||||||| | || || ||||| || ||||| || || || ||
Sbjct 171239 AGCTGCTTGCCGGCAAATATCAACCTTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 171298
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
||||| || ||| | || | || ||||| | ||||| ||||| |||| |||||
Sbjct 171299 ATTTTGGCCTTCACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATGGTTTTT 171358
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | || || ||||| ||||||||
Sbjct 171359 CCAGTGAGGGTCTTGACAAAGATCTGCAT 171387
Score = 109 bits (120), Expect = 4e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||||||||| ||||| |||||||| || || | ||| | | |||| || | ||
Sbjct 146693 TGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGT 146752
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | | ||| ||||| || |||||||| ||||| || || || |||
Sbjct 146753 TTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTT 146812
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | || || || | |||||||| | ||||| || || || ||
Sbjct 146813 GCCTTCACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTA 146872
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| ||| || ||||| ||||||||
Sbjct 146873 AGAGTCTTCACAAAAATCTGCAT 146895
Score = 109 bits (120), Expect = 4e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||||||||| ||||| |||||||| || || | ||| | | |||| || | ||
Sbjct 151857 TGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGT 151916
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | | ||| ||||| || |||||||| ||||| || || || |||
Sbjct 151917 TTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTT 151976
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | || || || | |||||||| | ||||| || || || ||
Sbjct 151977 GCCTTCACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTA 152036
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| ||| || ||||| ||||||||
Sbjct 152037 AGAGTCTTCACAAAAATCTGCAT 152059
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
||||||||||| || ||||| || ||||| || || | || | | |||| || | |||
Sbjct 171869 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGC 171928
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || ||||| | ||| || || || |||||||| || ||||| || || ||
Sbjct 171929 TTGCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTA 171988
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | ||||| || | ||||| ||||| |||| || ||||| ||
Sbjct 171989 GCCTTCACGTTATCGATTGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCTGTG 172048
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 172049 AGGGTCTTGACGAAAATCTGCAT 172071
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| || || | ||| | || | ||| ||||| ||||| ||||| || || || || ||
Sbjct 171389 CCACCCCTAAGACGAAGCACAAGATGGAGGGTGGATTCCTTTTGAATGTTATAGTCAGCA 171448
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | | |||| || | ||||| || ||||| || | | || || || || ||
Sbjct 171449 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGGTCCGGGGGG 171508
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
||||| || || || || || || |||||| | || | ||||| || | |||||
Sbjct 171509 ATGCCCTCCTTGTCCTGTATCTTAGCCTTTACATTGTCGATGGTGTCCGAGCTCTCCACC 171568
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| |||| || || || || | || || ||||||||||||||
Sbjct 171569 TCAAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACAAATATCTGCAT 171615
>seq19607
Length=286188
Score = 132 bits (146), Expect = 4e-26
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
||||| || ||||| || || |||||||||||||||| || | | | || || | |||
Sbjct 225713 TGAAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGC 225654
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || || || ||||||||||| ||||||||||| || ||||| || || |||
Sbjct 225653 TTCCCGGCGAAGATTAAGCGCTGTTGATCCGGCGGAATGCCCTCCTTATCCTGGATCTTT 225594
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | || ||||| | ||||| || || |||| ||| || || |||
Sbjct 225593 GCCTTAACGTTATCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTT 225534
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| |||||| || || ||||||||
Sbjct 225533 AGAGTTTTGACGAAGATCTGCAT 225511
>seq15016
Length=583550
Score = 132 bits (146), Expect = 4e-26
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
||||| || ||||| || || |||||||||||||||| || | | | || || | |||
Sbjct 437732 TGAAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGC 437673
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || || || ||||||||||| ||||||||||| || ||||| || ||||||
Sbjct 437672 TTCCCGGCGAAGATTAAGCGCTGTTGATCTGGCGGAATGCCCTCCTTATCCTGGATTTTT 437613
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | || ||||| | ||||| || || |||| ||| || || |||
Sbjct 437612 GCCTTAACGTTGTCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTT 437553
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| ||||| || || ||||||||
Sbjct 437552 AGGGTTTTGACGAAGATCTGCAT 437530
>seq40947
Length=4604
Score = 123 bits (136), Expect = 2e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|||||||| |||||||| ||||||||||| || || | || | | | || || | |||
Sbjct 1883 TGAAGGGTTGATTCTTTCTGTATATTGTAGTCCGCAAGCGTGCGGCCGTCCTCAAGCTGC 1824
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||| ||||| || | | || ||||| |||||||| || || ||||||||||| ||
Sbjct 1823 TTACCAGCAAAGATGAGCCTTTGCTGATCCGGCGGAATCCCCTCCTTATCTTGAATCTTC 1764
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | || || || | ||||| || || |||| |||||| || ||
Sbjct 1763 GACTTCACATTCTCAATTGTATCCGAGCTCTCCACGTCCAGGGTGATCGTTTTACCAGTA 1704
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| ||| || ||||| ||||||||
Sbjct 1703 AGAGTCTTAACAAAAATCTGCAT 1681
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| | | ||| | ||| | || |||||||| || || || || ||||| |||| |
Sbjct 1223 CCTCCCCGAAGACGAAGAACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1164
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| |||| | | || || | || || || || ||||||| | ||| || || || ||
Sbjct 1163 AGGGTTCGGCCGTCCTCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGG 1104
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|| || || || || || ||||| || || | || | ||||| || | |||||
Sbjct 1103 ATTCCCTCCTTGTCCTGGATTTTGGTCTTAACGTTCTCGATCGTGTCGGAACTCTCCACC 1044
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| |||| || |||||||| | || || || |||||||||||
Sbjct 1043 TCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTAACGAATATCTGCAT 997
Score = 91.5 bits (100), Expect = 1e-13
Identities = 164/240 (68%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
||||| || | ||| | ||| | || || || ||||| || || || ||||||||||||
Sbjct 1451 CCTCCCCTGAGACGGAGAACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCG 1392
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | | | || || | |||||| || ||||| |||| | ||| || || || ||
Sbjct 1391 AGGGTGCGGCCGTCCTCAAGTTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGG 1332
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
||||| || || || || ||||| || || | || | ||||| || | || ||
Sbjct 1331 ATGCCCTCCTTGTCCTGGATTTTGGACTTAACGTTCTCGATGGTGTCCGAACTCTCTACG 1272
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482
||||| || | || || || || | ||| || | || |||||||| | | ||||||
Sbjct 1271 TCAAGGGTAATAGTCTTCCCTGTGAGAGTCTTGATGAAGATCTGCATCCCTCCCCGAAGA 1212
>seq25488
Length=371609
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || || || || ||||| || ||||| | ||| | |||| || | |||
Sbjct 181535 TGGAGGGTCGACTCCTTCTGGATATTATAGTCGGCCAGAGTACGTCCATCCTCGAGCTGC 181476
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
||||| || || || | || || || || || ||||||||||| || || || || ||
Sbjct 181475 TTACCGGCGAAGATAAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTG 181416
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | || || || | |||||| || || || | ||| || || |||
Sbjct 181415 GCCTTAACGTTGTCAATGGTATCGGAGGATTCCACCTCCAGGGTAATCGTCTTCCCCGTT 181356
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| ||||| || || ||||||||
Sbjct 181355 AGGGTTTTCACGAAGATCTGCAT 181333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395926309366014
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |