Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq14985 107 1e-18 seq19607 98.7 8e-16 seq41242 87.8 1e-12 seq40947 87.8 1e-12 seq38797 87.8 1e-12 >seq14985 Length=335608 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || |||| ||| |||| ||| || || ||| || ||||| |||||||| | | Sbjct 170123 CCGCCTCTAAGCCTCAAAACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCCGCT 170182 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || ||||||||||| |||||||| |||| ||| |||||||| | ||| Sbjct 170183 AAGGTCCGACCATCTTCCAACTGCTTCCCGGCAAAAATCAATCGTTGTTGATCAGGTGGA 170242 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 170243 ATGCCCTCCTTGTC 170256 >seq19607 Length=286188 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || ||||||||||| | || | || |||| || | |||||| ||||| || Sbjct 225701 TCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAG 225642 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | ||||||||||||| |||| ||||||||| || |||||| || || | Sbjct 225641 ATTAAGCGCTGTTGATCCGGCGGAATGCCCTCCTTATCCTGGATCTTTGCCTTAACGTTA 225582 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||||||||| | || ||||| || ||||| | |||||| || Sbjct 225581 TCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGAGTTTTGACG 225522 Query 48756 AAAATCTGCATC 48767 || ||||||||| Sbjct 225521 AAGATCTGCATC 225510 >seq41242 Length=195047 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||||||||| || | ||| | || | || || | ||| || || ||||| Sbjct 146705 TCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 146764 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | |||| |||||| ||||| |||||| || || | Sbjct 146765 ATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTA 146824 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || |||||| |||| || || || |||||||| | ||| || ||| Sbjct 146825 TCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTCACA 146884 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 146885 AAAATCTGCAT 146895 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||||||||| || | ||| | || | || || | ||| || || ||||| Sbjct 151869 TCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 151928 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | |||| |||||| ||||| |||||| || || | Sbjct 151929 ATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTA 151988 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || |||||| |||| || || || |||||||| | ||| || ||| Sbjct 151989 TCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTCACA 152048 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 152049 AAAATCTGCAT 152059 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||| | ||| || ||| || |||||||| || || |||| Sbjct 171389 CCACCCCTAAGACGAAGCACAAGATGGAGGGTGGATTCCTTTTGAATGTTATAGTCAGCA 171448 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | |||||| || ||||| || |||| || || |||| ||| Sbjct 171449 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGGTCCGGGGGG 171508 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| |||||| | | | || || ||||||| Sbjct 171509 ATGCCCTCCTTGTCCTGTATCTTAGCCTTTACATTGTCGATGGTGTCCGAGCTCTCCACC 171568 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || ||||| || | || || ||||| ||||||||| Sbjct 171569 TCAAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACAAATATCTGCATC 171616 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||| | || || || || || || || ||||| || | Sbjct 172073 CCTCCCCTAAGACGAAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCA 172132 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| ||||||||||| || ||||| ||||| | ||| ||||||| ||| Sbjct 172133 AGGGTGCGGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGG 172192 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || ||||| ||| ||| | | | | || || |||||| Sbjct 172193 ATGCCCTCCTTATCCTGGATCTTAGCTTTCACATTATCGATGGTGTCGGAGCTCTCCACT 172252 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || || | ||||| ||||| ||||||||| Sbjct 172253 TCAAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATCTGCATC 172300 >seq40947 Length=4604 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| || |||||||| || | || | || |||| || | ||||||||| ||||| Sbjct 1871 TCTTTCTGTATATTGTAGTCCGCAAGCGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAG 1812 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | || ||||||| |||| |||||||| || |||||| || ||| Sbjct 1811 ATGAGCCTTTGCTGATCCGGCGGAATCCCCTCCTTATCTTGAATCTTCGACTTCACATTC 1752 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || |||||| |||| || |||||||| || || | ||| || ||| Sbjct 1751 TCAATTGTATCCGAGCTCTCCACGTCCAGGGTGATCGTTTTACCAGTAAGAGTCTTAACA 1692 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 1691 AAAATCTGCAT 1681 >seq38797 Length=1288649 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| |||||| ||||| || || || | ||| | || |||| || | ||| Sbjct 629649 TGGAGCGTGGACTCTTTCTGAATGTTATAGTCCGCAAGAGTGCGGCCGTCCTCAAGCTGT 629590 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 ||||||||||| || || | || || |||| |||| ||||||||||| |||||| Sbjct 629589 TTACCGGCAAAGATAAGCCTTTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTT 629530 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||||| | | | || || ||||||||||| || || |||||||| || Sbjct 629529 GCCTTTACGTTGTCAATTGTGTCCGAGCTCTCCACCTCCAGGGTGATAGTTTTTCCAGTG 629470 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || ||||| || ||||| Sbjct 629469 AGGGTCTTCACAAATATTTGCAT 629447 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | || | ||| || ||| ||| || || || |||||||||| Sbjct 628761 CCTCCCCTCAGACGGAGAACTAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 628702 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | ||| || |||||||| ||||| | || ||||| | || Sbjct 628701 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGG 628642 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| ||||| | | || || || ||||||| Sbjct 628641 ATGCCCTCCTTGTCCTGGATCTTGGCCTTTACGTTGTCAATAGTATCCGAACTCTCCACC 628582 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || ||||| || || || | ||| || || || ||||||||| Sbjct 628581 TCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCATC 628534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380599139561346