Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq25504 158 2e-33 seq55201 149 1e-30 >seq25504 Length=639989 Score = 158 bits (174), Expect = 2e-33 Identities = 387/583 (66%), Gaps = 8/583 (1%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||| | ||| |||||||| | ||||| || ||||| || |||||| |||||||| Sbjct 367382 TAGAGAAGGCAAGCAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAG 367441 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| |||||| ||||| | ||| |||| ||||||||||| || || ||| || Sbjct 367442 AAGGTGAGACCGGGCATTAGCCCTCTCTTCTTGAGCCAGAAGATGGCACAGAAGCTACCG 367501 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 ||||||||||| ||||| || || ||||| || | |||| | || ||| | Sbjct 367502 GAGAAGAAGATTCCCTCAACGCAAGCAAACGCAAGGATGCGCTCTGCAAATGAATTGGAG 367561 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 ||| |||||| || ||||| | ||||| || ||| || | ||||| Sbjct 367562 GCGTC---GATCCAACGTAGGGCCCACTGAGCCTTGCGGGCGACGCAGGGGACGGTCTCG 367618 Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421 ||||| ||||||| | ||||| | || | || || ||| || Sbjct 367619 ATGGCATGGAAGAGATGGGATTTCTCACAGGAATCTTTGATGTATGTTTCGAGAAGAAGG 367678 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 ||||||||| ||||| | || || || || ||||| || || |||||||| | ||| Sbjct 367679 CTGTACATCTCGGAGTGGATGTTTTCGATGGCAATCTGAAATCCATAGAAGGCGCGAGCC 367738 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCA-GATTCTCATTGACTATCCCATC 48540 || | ||| || || | ||| | || ||| | ||||| ||| || ||||| Sbjct 367739 TCCGGGAGCTGTACCTCCCTCATGAAGCGG-CCGGCAAGGTTCTCGAGGACGATTCCATC 367797 Query 48541 TGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG- 48599 || |||||||||||||| || || || | | ||| |||||||||| |||||| | Sbjct 367798 AGATGCAGCAAAGAAGGCGAGAACGTGGGTGACGAAGTGGCGCTCGTCAGAGGTGAGGGA 367857 Query 48600 --CATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 || |||| | | ||||| | ||||| ||||| || | ||||||||||| || Sbjct 367858 TTGATCCCAGTGACGGAGGTCTTGGGAGAGGTCGACTTCCTCTGCTGTCCAGAAGGAGGC 367917 Query 48658 GAGTGCTTTTTTGTACATGCCCCATATGTCCGGATAGTCTATC 48700 ||||| |||||||| |||| || | |||||| |||| Sbjct 367918 TTCGGCTTTCTTGTACATCTCCCAGATCTGAGGATAGCGTATC 367960 >seq55201 Length=1221137 Score = 149 bits (164), Expect = 1e-30 Identities = 436/663 (66%), Gaps = 19/663 (3%) Strand=Plus/Minus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| |||| || | ||| || ||| | ||||||| ||| | |||||| Sbjct 301530 AAACTCCCTCTCAATATCCACAGCATCCGCAACAATCTCTCGAACCCTCTCCTCTGAAAT 301471 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 |||||| ||| | | ||| | | |||||||||||| | || | || || || Sbjct 301470 CTTGTTGATCAGAAGACT---ATATAAAAGGCAGGCAAAGTCGCAATGGAGACCCTCATC 301414 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 || || ||| |||||||||| |||||| ||||| | || | || |||||||| Sbjct 301413 ACGAGATATCAGCTCGTTGGAGAATGTGAGACCGGGCATCAAACCGCGCTTCTTGAGCCA 301354 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 ||| || || ||| |||||||||||| || || || || ||||| ||| | Sbjct 301353 GAAGATGGCGCAGAAGCTGCCAGAGAAGAAAATACCTTCAACGCAAGCGAAAGCGAGAAT 301294 Query 48280 CCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339 || ||| | || | | | ||| |||||| |||||||| | ||||| Sbjct 301293 CCGCTCAGCAAATGTATCAGAGGCGTCA---ATCCAGCGCAGCGCCCACTGAGCCTTGCG 301237 Query 48340 CTTGATGCATGGCATCGTCTCTATGGCCCGGAA---GAGCTTCTTGCACTCACCTGCGTC 48396 || ||| || || ||||| ||||| || || ||| || || || ||| Sbjct 301236 AGCGACGCAGGGGATGGTCTCGATGGCACGAAAAAGGAGGGATTTTTCCTT---TGAGTC 301180 Query 48397 CGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGAT 48456 | || || ||| || ||||| || ||||| | || || || ||||| Sbjct 301179 TTTGATGTAAGTCTCGAGGAGAAGACTATACATTTCGGAGTGAATGTTTTCAATGGCGAT 301120 Query 48457 CTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGA-GAATCTCTCCA 48515 ||| || |||||||| || | ||||| | || ||||| | | | ||||| || Sbjct 301119 CTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAGTTGAACTTC-GCGCATGAATCGG-CCG 301062 Query 48516 GC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGG 48574 || || |||||| ||| || ||||||||||| ||||||||||| ||||| || | | | Sbjct 301061 GCTAGGTTCTCAAGGACGATACCATCTGAAGCGGCAAAGAAGGCGAGGACGTGGGTGACG 301002 Query 48575 AAATGGCGCTCGTTGTGGGTGAGAG---CATTCCAGCCCTGTACGTCTTTGCCCAGGTCC 48631 || |||||||||| | ||| || | || |||| | | ||||| ||||| Sbjct 301001 AAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCCCAGTGACGCAGGTCTTGTGAGAGGTCG 300942 Query 48632 ACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGA 48691 || |||||| ||||||||||||| || |||||| |||||||| |||| || | |||| Sbjct 300941 ACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCTTTCTTGTACATCTCCCAGATCTGCGGA 300882 Query 48692 TAG 48694 ||| Sbjct 300881 TAG 300879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930683917447680