Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq25504 149 1e-30 seq55201 109 1e-18 >seq25504 Length=639989 Score = 149 bits (164), Expect = 1e-30 Identities = 379/570 (66%), Gaps = 10/570 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || || ||| |||||| || || || | || || Sbjct 367944 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACAGCAGAGGAAGTCGACCTC 367885 Query 25537 GCCAAGGACATGGACGGCTGGTACG---CTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | ||| | |||| | | || || ||||||| || || ||| Sbjct 367884 TCCCAAGACCTCCGTCACTGGGATCAATCCCTCACCTCTGACGAGCGCCACTTCGTCACC 367825 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || |||||||| || |||||||| || || |||||| || || | Sbjct 367824 CACGTTCTCGCCTTCTTTGCTGCATCTGATGGAATCGTCCTCGAGAACCTTGCCGGCCGC 367765 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| ||||| || ||| | |||||| ||||| || || ||||| |||||| Sbjct 367764 TTCATGAGGGAGGTACAGCTCCCGGAGGCTCGCGCCTTCTATGGATTTCAGATTGCCATC 367705 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 ||||| | ||||| ||| |||| | ||||| || ||||| | ||| || | Sbjct 367704 GAAAACATCCACTCCGAGATGTACAGCCTTCTTCTCGAAACATACATCAAAGAT-TC-CT 367647 Query 25774 GAGAGAGATCGG--CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 | |||| ||| || || |||||||||| | | ||| || || | ||||| | Sbjct 367646 GTGAGAAATCCCATCTCTTCCATGCCATCGAGACCGTCCCCTGCGTCGCCCGCAAGGCTC 367587 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||| | |||||| || ||| | | | |||| ||||| | | || | Sbjct 367586 AGTGGGCCCTACGTTGGATCGAC-GCCTC--CAATTCATTTGCAGAGCGCATCCTTGCGT 367530 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 ||||| || ||||| ||||| ||| |||| || |||||||||||||||||| Sbjct 367529 TTGCTTGCGTTGAGGGAATCTTCTTCTCCGGTAGCTTCTGTGCCATCTTCTGGCTCAAGA 367470 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 ||| ||| |||||||| || ||| |||||||||||||| | |||||||||| Sbjct 367469 AGAGAGGGCTAATGCCCGGTCTCACCTTCTCCAACGAGCTCATATCTCGTGACGAGGGTC 367410 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 | ||| | || ||||| ||||| ||||||| Sbjct 367409 TGCACTGTGACTTTGCTTGCCTTCTCTACA 367380 >seq55201 Length=1221137 Score = 109 bits (120), Expect = 1e-18 Identities = 370/566 (65%), Gaps = 18/566 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| || | || |||||| || |||||| | || || Sbjct 300889 ATCTGGGAGATGTACAAGAAAGCAGAGGCTTCCTTCTGGACTGCGGAAGAGGTCGACCTC 300948 Query 25537 GCCAAGGACATGGACGGCTGGTA---CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 | | ||| || |||| | | | || || ||||||| || || ||| Sbjct 300949 TCACAAGACCTGCGTCACTGGGATCACACACTTACCTCCGACGAGCGCCACTTCGTCACC 301008 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || |||||||| || || |||||||| || ||||| || || || Sbjct 301009 CACGTCCTCGCCTTCTTTGCCGCTTCAGATGGTATCGTCCTTGAGAACCTAGCCGGCCGA 301068 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | ||||| || | |||||| |||||||| || ||||| ||||| Sbjct 301069 TTCATGCGCGAAGTTCAACTCCCGGAGGCTCGCGCATTCTACGGCTTTCAGATCGCCATT 301128 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTC 25770 ||||| | ||||| || ||||| | ||||| | ||| ||||| | |||| || Sbjct 301129 GAAAACATTCACTCCGAAATGTAT---AGTCTTCTCCTCGAGACTTACATCAAAGAC-TC 301184 Query 25771 GCCGAGAGAGATCGG--CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | || | ||| || ||| ||||||||||| ||| ||| || || | |||| Sbjct 301185 AAAG-GAAAAATCCCTCCTTTTTCGTGCCATCGAGACCATCCCCTGCGTCGCTCGCAAGG 301243 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | | |||||| || ||||| || ||| | ||| |||| |||||| | | | Sbjct 301244 CTCAGTGGGCGCTGCGCTGGATTGAC-GCCTCTGA--TACATTTGCTGAGCGGATTCTCG 301300 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 | || ||| || || || || || ||| || || |||| |||||||||||||| Sbjct 301301 CTTTCGCTTGCGTTGAAGGTATTTTCTTCTCTGGCAGCTTCTGCG-CCATCTTCTGGCTC 301359 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || || |||||||| || || ||||||||||| || | || ||| Sbjct 301360 AAGAAGCGCGGTTTGATGCCCGGTCTCACATTCTCCAACGAGCTGATATCTCGTGATGAG 301419 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCT 26033 |||||||| | || ||||||||||| Sbjct 301420 GGTCTCCATTGCGACTTTGCCTGCCT 301445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927998366954880