Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq25504 149 1e-30
seq55201 109 1e-18
>seq25504
Length=639989
Score = 149 bits (164), Expect = 1e-30
Identities = 379/570 (66%), Gaps = 10/570 (2%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||||||||||||||||| || || ||| |||||| || || || | || ||
Sbjct 367944 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACAGCAGAGGAAGTCGACCTC 367885
Query 25537 GCCAAGGACATGGACGGCTGGTACG---CTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
|| | ||| | |||| | | || || ||||||| || || |||
Sbjct 367884 TCCCAAGACCTCCGTCACTGGGATCAATCCCTCACCTCTGACGAGCGCCACTTCGTCACC 367825
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|||| | || |||||||| || |||||||| || || |||||| || || |
Sbjct 367824 CACGTTCTCGCCTTCTTTGCTGCATCTGATGGAATCGTCCTCGAGAACCTTGCCGGCCGC 367765
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
|||| ||||| || ||| | |||||| ||||| || || ||||| ||||||
Sbjct 367764 TTCATGAGGGAGGTACAGCTCCCGGAGGCTCGCGCCTTCTATGGATTTCAGATTGCCATC 367705
Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773
||||| | ||||| ||| |||| | ||||| || ||||| | ||| || |
Sbjct 367704 GAAAACATCCACTCCGAGATGTACAGCCTTCTTCTCGAAACATACATCAAAGAT-TC-CT 367647
Query 25774 GAGAGAGATCGG--CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831
| |||| ||| || || |||||||||| | | ||| || || | ||||| |
Sbjct 367646 GTGAGAAATCCCATCTCTTCCATGCCATCGAGACCGTCCCCTGCGTCGCCCGCAAGGCTC 367587
Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891
||||||| | |||||| || ||| | | | |||| ||||| | | || |
Sbjct 367586 AGTGGGCCCTACGTTGGATCGAC-GCCTC--CAATTCATTTGCAGAGCGCATCCTTGCGT 367530
Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951
||||| || ||||| ||||| ||| |||| || ||||||||||||||||||
Sbjct 367529 TTGCTTGCGTTGAGGGAATCTTCTTCTCCGGTAGCTTCTGTGCCATCTTCTGGCTCAAGA 367470
Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011
||| ||| |||||||| || ||| |||||||||||||| | ||||||||||
Sbjct 367469 AGAGAGGGCTAATGCCCGGTCTCACCTTCTCCAACGAGCTCATATCTCGTGACGAGGGTC 367410
Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACA 26041
| ||| | || ||||| ||||| |||||||
Sbjct 367409 TGCACTGTGACTTTGCTTGCCTTCTCTACA 367380
>seq55201
Length=1221137
Score = 109 bits (120), Expect = 1e-18
Identities = 370/566 (65%), Gaps = 18/566 (3%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||||||||||||||||| || | || |||||| || |||||| | || ||
Sbjct 300889 ATCTGGGAGATGTACAAGAAAGCAGAGGCTTCCTTCTGGACTGCGGAAGAGGTCGACCTC 300948
Query 25537 GCCAAGGACATGGACGGCTGGTA---CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
| | ||| || |||| | | | || || ||||||| || || |||
Sbjct 300949 TCACAAGACCTGCGTCACTGGGATCACACACTTACCTCCGACGAGCGCCACTTCGTCACC 301008
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|||| | || |||||||| || || |||||||| || ||||| || || ||
Sbjct 301009 CACGTCCTCGCCTTCTTTGCCGCTTCAGATGGTATCGTCCTTGAGAACCTAGCCGGCCGA 301068
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
|||| | ||||| || | |||||| |||||||| || ||||| |||||
Sbjct 301069 TTCATGCGCGAAGTTCAACTCCCGGAGGCTCGCGCATTCTACGGCTTTCAGATCGCCATT 301128
Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTC 25770
||||| | ||||| || ||||| | ||||| | ||| ||||| | |||| ||
Sbjct 301129 GAAAACATTCACTCCGAAATGTAT---AGTCTTCTCCTCGAGACTTACATCAAAGAC-TC 301184
Query 25771 GCCGAGAGAGATCGG--CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828
| || | ||| || ||| ||||||||||| ||| ||| || || | ||||
Sbjct 301185 AAAG-GAAAAATCCCTCCTTTTTCGTGCCATCGAGACCATCCCCTGCGTCGCTCGCAAGG 301243
Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888
| | |||||| || ||||| || ||| | ||| |||| |||||| | | |
Sbjct 301244 CTCAGTGGGCGCTGCGCTGGATTGAC-GCCTCTGA--TACATTTGCTGAGCGGATTCTCG 301300
Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947
| || ||| || || || || || ||| || || |||| ||||||||||||||
Sbjct 301301 CTTTCGCTTGCGTTGAAGGTATTTTCTTCTCTGGCAGCTTCTGCG-CCATCTTCTGGCTC 301359
Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007
||| || || |||||||| || || ||||||||||| || | || |||
Sbjct 301360 AAGAAGCGCGGTTTGATGCCCGGTCTCACATTCTCCAACGAGCTGATATCTCGTGATGAG 301419
Query 26008 GGTCTCCACAGAGATTTTGCCTGCCT 26033
|||||||| | || |||||||||||
Sbjct 301420 GGTCTCCATTGCGACTTTGCCTGCCT 301445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 927998366954880
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