Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq58380 136 5e-27 seq44097 105 8e-18 seq25504 96.9 4e-15 seq55201 84.2 3e-11 >seq58380 Length=580937 Score = 136 bits (150), Expect = 5e-27 Identities = 279/412 (68%), Gaps = 2/412 (0%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||||| ||| |||| || || | | || | |||||| || || ||| Sbjct 482792 GTGGAGTTTCTGAAGAAACCAGAAAGGTTTACTGCTATTGGTGCTCGTATACCTAAAGGT 482851 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | |||||| ||| || ||||| |||||||| || || ||| || || || ||| Sbjct 482852 GTTCTTCTCATTGGTCCTCCTGGTACTGGAAAGACTCTACTTGCCAAGGCGATTGCTGGT 482911 Query 175357 GAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGG 175415 ||| | || || || || || | ||| | | | |||||||||||||||||||| Sbjct 482912 GAAGCTGGCGTTCCCTTTTTCTCAAT-CTCAGGATCTGAGTTTGTGGAGATGTTTGTTGG 482970 Query 175416 TGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTAT 175475 || |||||| | | ||||| ||||| || | | || |||||| ||| ||||| Sbjct 482971 CGTTGGTGCCTCACGAGTTCGAGATCTTTTCAAGAAGGCTAAAGAAAATGCACCTTGTAT 483030 Query 175476 TGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGC 175535 ||| || ||||||| |||||||| || || | ||| || | | ||| | || Sbjct 483031 TGTGTTTGTTGATGAAATTGATGCTGTTGGAAGGCAGCGAGGAACAGGTATTGGAGGAGG 483090 Query 175536 AAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAA 175595 ||||| || ||||||||||| | ||||| || | || ||||||||||| ||||| Sbjct 483091 GAATGATGAAAGAGAACAAACTCTGAATCAGCTTTTAACTGAGATGGATGGTTTTGAAGG 483150 Query 175596 TGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 | ||||| || | ||| |||| || ||||| || | || || || ||| Sbjct 483151 AAATACTGGTATCATAGTTCTTGCAGCTACTAACCGTGCAGACATTCTAGAT 483202 >seq44097 Length=433404 Score = 105 bits (116), Expect = 8e-18 Identities = 220/322 (68%), Gaps = 12/322 (4%) Strand=Plus/Minus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCG-CGGGTAAGCCAGGTACGGGAAAGACCC 175333 |||||| ||||| ||| ||| |||| | | |||| | || || || || ||||| | Sbjct 155280 TGGTGCTAAGATTCCCAAAGGTTGCCTTTTGGTCGGGCCA-CCGGGAACCGGGAAGACAC 155222 Query 175334 TCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAA 175393 | || ||| |||| | || || || | ||| || ||| | ||| |||| || Sbjct 155221 TGCTAGCCAGAGCGGTTGCCGGCGAGGCCGGTGTGCCGTTCTTTTCGTGTGCTGCTTCAG 155162 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 | |||||||| | |||||||| || || || ||||| | ||| | ||||| | | Sbjct 155161 AGTTTGTGGAACTTTTTGTTGGAGTTGGAGCTTCGAGGGTGAGGGATTTGTTTGAGAAGG 155102 Query 175454 CCC--GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCA 175511 | |||||| || |||||||| || ||||||||||||||||| || || | ||| Sbjct 155101 CAAAGGCGAAAGCT--CCTTGTATTGTTTTTATTGATGAGATTGATGCAGTTGGAAGGCA 155044 Query 175512 ACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACT 175568 | | ||||| |||| | |||||||||||||| || || |||||||| || Sbjct 155043 GAGAGGGGCTGGGCTTGGTGGT---GGGAATGACGAGAGAGAGCAGACTATTAATCAGCT 154987 Query 175569 ACTCACCGAGATGGATGGCTTT 175590 | || ||||||||||| ||| Sbjct 154986 CTTGACTGAGATGGATGGGTTT 154965 >seq25504 Length=639989 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || || || |||||| | |||||||||| || || ||||| |||||||||||||| Sbjct 367554 TCATTTGCAGAGCGCATCCTTGCGTTTGCTTGCGTTGAGGGAATCTTCTTCTCCGGTAGC 367495 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 ||||| || || | ||| | |||||| | || || ||||| || || |||||| || Sbjct 367494 TTCTGTGCCATCTTCTGGCTCAAGAAGAGAGGGCTAATGCCCGGTCTCACCTTCTCCAAC 367435 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || || || || |||||||| ||| || ||||| Sbjct 367434 GAGCTCATATCTCGTGACGAGGGTCTGCACTGTGACTTTGC 367394 >seq55201 Length=1221137 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 || || ||||| || | || || || || || || ||||| |||||||| || ||| Sbjct 301282 TTTGCTGAGCGGATTCTCGCTTTCGCTTGCGTTGAAGGTATTTTCTTCTCTGGCAGCTTC 301341 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||||| || | ||| | |||||||| ||| | ||||| || || ||||| || || Sbjct 301342 TGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCCGGTCTCACATTCTCCAACGAG 301401 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || || |||||||||||||| || |||||| Sbjct 301402 CTGATATCTCGTGATGAGGGTCTCCATTGCGACTTTGCC 301440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596025961037760