Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq58380 136 5e-27
seq44097 105 8e-18
seq25504 96.9 4e-15
seq55201 84.2 3e-11
>seq58380
Length=580937
Score = 136 bits (150), Expect = 5e-27
Identities = 279/412 (68%), Gaps = 2/412 (0%)
Strand=Plus/Plus
Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296
||||| ||||| ||| |||| || || | | || | |||||| || || |||
Sbjct 482792 GTGGAGTTTCTGAAGAAACCAGAAAGGTTTACTGCTATTGGTGCTCGTATACCTAAAGGT 482851
Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356
| |||||| ||| || ||||| |||||||| || || ||| || || || |||
Sbjct 482852 GTTCTTCTCATTGGTCCTCCTGGTACTGGAAAGACTCTACTTGCCAAGGCGATTGCTGGT 482911
Query 175357 GAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGG 175415
||| | || || || || || | ||| | | | ||||||||||||||||||||
Sbjct 482912 GAAGCTGGCGTTCCCTTTTTCTCAAT-CTCAGGATCTGAGTTTGTGGAGATGTTTGTTGG 482970
Query 175416 TGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTAT 175475
|| |||||| | | ||||| ||||| || | | || |||||| ||| |||||
Sbjct 482971 CGTTGGTGCCTCACGAGTTCGAGATCTTTTCAAGAAGGCTAAAGAAAATGCACCTTGTAT 483030
Query 175476 TGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGC 175535
||| || ||||||| |||||||| || || | ||| || | | ||| | ||
Sbjct 483031 TGTGTTTGTTGATGAAATTGATGCTGTTGGAAGGCAGCGAGGAACAGGTATTGGAGGAGG 483090
Query 175536 AAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAA 175595
||||| || ||||||||||| | ||||| || | || ||||||||||| |||||
Sbjct 483091 GAATGATGAAAGAGAACAAACTCTGAATCAGCTTTTAACTGAGATGGATGGTTTTGAAGG 483150
Query 175596 TGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647
| ||||| || | ||| |||| || ||||| || | || || || |||
Sbjct 483151 AAATACTGGTATCATAGTTCTTGCAGCTACTAACCGTGCAGACATTCTAGAT 483202
>seq44097
Length=433404
Score = 105 bits (116), Expect = 8e-18
Identities = 220/322 (68%), Gaps = 12/322 (4%)
Strand=Plus/Minus
Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCG-CGGGTAAGCCAGGTACGGGAAAGACCC 175333
|||||| ||||| ||| ||| |||| | | |||| | || || || || ||||| |
Sbjct 155280 TGGTGCTAAGATTCCCAAAGGTTGCCTTTTGGTCGGGCCA-CCGGGAACCGGGAAGACAC 155222
Query 175334 TCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAA 175393
| || ||| |||| | || || || | ||| || ||| | ||| |||| ||
Sbjct 155221 TGCTAGCCAGAGCGGTTGCCGGCGAGGCCGGTGTGCCGTTCTTTTCGTGTGCTGCTTCAG 155162
Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453
| |||||||| | |||||||| || || || ||||| | ||| | ||||| | |
Sbjct 155161 AGTTTGTGGAACTTTTTGTTGGAGTTGGAGCTTCGAGGGTGAGGGATTTGTTTGAGAAGG 155102
Query 175454 CCC--GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCA 175511
| |||||| || |||||||| || ||||||||||||||||| || || | |||
Sbjct 155101 CAAAGGCGAAAGCT--CCTTGTATTGTTTTTATTGATGAGATTGATGCAGTTGGAAGGCA 155044
Query 175512 ACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACT 175568
| | ||||| |||| | |||||||||||||| || || |||||||| ||
Sbjct 155043 GAGAGGGGCTGGGCTTGGTGGT---GGGAATGACGAGAGAGAGCAGACTATTAATCAGCT 154987
Query 175569 ACTCACCGAGATGGATGGCTTT 175590
| || ||||||||||| |||
Sbjct 154986 CTTGACTGAGATGGATGGGTTT 154965
>seq25504
Length=639989
Score = 96.9 bits (106), Expect = 4e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127
|| || || |||||| | |||||||||| || || ||||| ||||||||||||||
Sbjct 367554 TCATTTGCAGAGCGCATCCTTGCGTTTGCTTGCGTTGAGGGAATCTTCTTCTCCGGTAGC 367495
Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187
||||| || || | ||| | |||||| | || || ||||| || || |||||| ||
Sbjct 367494 TTCTGTGCCATCTTCTGGCTCAAGAAGAGAGGGCTAATGCCCGGTCTCACCTTCTCCAAC 367435
Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228
|| || || || || || |||||||| ||| || |||||
Sbjct 367434 GAGCTCATATCTCGTGACGAGGGTCTGCACTGTGACTTTGC 367394
>seq55201
Length=1221137
Score = 84.2 bits (92), Expect = 3e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
|| || ||||| || | || || || || || || ||||| |||||||| || |||
Sbjct 301282 TTTGCTGAGCGGATTCTCGCTTTCGCTTGCGTTGAAGGTATTTTCTTCTCTGGCAGCTTC 301341
Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190
||||| || | ||| | |||||||| ||| | ||||| || || ||||| || ||
Sbjct 301342 TGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCCGGTCTCACATTCTCCAACGAG 301401
Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
|| || || || |||||||||||||| || ||||||
Sbjct 301402 CTGATATCTCGTGATGAGGGTCTCCATTGCGACTTTGCC 301440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596025961037760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |