Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10693 125 2e-23 seq46914 120 9e-22 seq58380 107 6e-18 >seq10693 Length=201760 Score = 125 bits (138), Expect = 2e-23 Identities = 231/339 (68%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | ||| || || |||||| ||| | | |||||| Sbjct 191996 ATTTCTAACAGTGCCATCATATTTGACCATTATATCCTCCATAGCCTTCACAAGACGACG 191937 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||||||||||| ||| || || || ||||| ||||||||||| | | |||||| Sbjct 191936 TTGAATATAACCAGTCTCAGAAGTCTTCACTGCTGTGTCAATTAGACCTTCCCTACCACC 191877 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| || || | ||| | || || || | | | ||| |||| || || Sbjct 191876 CATAGCATGAAAAAAGAACTCCTGTGGGGTTAAACCACGGAGGTACGAGTTCTCCACAAA 191817 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 |||||| || || || || ||||| ||||| || | || | | Sbjct 191816 ACCACGACTTTCAGGACCATAATCATCTTTGGTGAAGTGAGGTAATGTTCGACCGAGGAA 191757 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || ||||| ||||| ||||| || || |||||||| |||| ||| | | ||||||| || Sbjct 191756 TCCATATGGAATACGTTTTCCCTCCACATTCTGCTGCCCCACGCAGGCAGTCATCTGTGA 191697 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 |||||| | ||| ||||| || || || | ||||| Sbjct 191696 AATATTAATGAAACTACCCTTTGATCCTGCGGTAACCAT 191658 >seq46914 Length=1728908 Score = 120 bits (132), Expect = 9e-22 Identities = 336/511 (66%), Gaps = 16/511 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | |||| |||||| | || | || || | || ||||| ||| Sbjct 1377508 CTATCAAATCTTCCGGGACGAAGCAATGCTTGATCCAGAATCTCTGGTCGATTTGTGGCT 1377449 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 || | ||| |||| | || | || |||||||| |||| | |||||| Sbjct 1377448 GCAATTACTACAACCCCGCTGCTTCCACTGAAGCCATCCATCTCAGTTAGCAACTGATTA 1377389 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 || ||||| ||||| ||||||||| |||| ||| | | || ||| | | || Sbjct 1377388 AGCGTTTGCTCCCTCTCATCATTTCCTCCTCC--AATTCC---AGTCCCTCTCTGTCTT- 1377335 Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAA-----TTTTGTCTCGCAA 289084 ||||||||||| ||||| ||||| || |||| || || || ||||| || | Sbjct 1377334 CCAACAGCATCTATTTCATCAATAAATATCAGGCATGGGGAGCTAGCTTTTGCCTTG--- 1377278 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 ||| || || || || || | || ||||| | || || ||||||| | || || | Sbjct 1377277 TTG--AACAAATCCCTCACTCTTGAGGCTCCTACTCCCACGAACATTTCAATGAACTCTG 1377220 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || | || | || ||||| || || || ||||||| || | || || | || Sbjct 1377219 AACCTGACAGGGAAAAGAATGGAACTCCGGCCTCCCCTGCTATGGCTTTTGCTAGTAATG 1377160 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 | || ||||| || ||||| ||| | | ||||| ||| |||| | | | ||||| | | Sbjct 1377159 TTTTGCCTGTACCTGGTGGACCCACGAGAAGAACACCCCTTGGAATTCTAGCCCCCACTG 1377100 Query 289265 ACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 | | || || ||| || | ||| ||||| ||||||| | || | ||||||| Sbjct 1377099 CAGCAAACTTTTCTGGGAATTTCAGAAACTCTACGATTTCCTTGAAATCCTGCTTTGCCT 1377040 Query 289325 CATCACATCCTGCTACATCAGCAAAAGTAAT 289355 |||| || ||||||||| |||| ||||| Sbjct 1377039 CATCGATCCCAGCTACATCATCAAATGTAAT 1377009 >seq58380 Length=580937 Score = 107 bits (118), Expect = 6e-18 Identities = 341/517 (66%), Gaps = 20/517 (4%) Strand=Plus/Minus Query 288843 CACCCTCCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTT 288902 |||| |||||||||||| |||| | ||||||| |||| || || || | ||| Sbjct 483241 CACCTGCCTATCAAACCTTCCAGGCCTTAGCAATGCTGAATCTAGAATGTCTGCACGGTT 483182 Query 288903 TGTTGCTGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAA 288960 || ||||| | || | ||| | | ||| ||| ||| |||||||| |||||| Sbjct 483181 AGTAGCTGCAAGAACTATGATACCAGTA--TTTCCTTCAAAACCATCCATCTCAGTTAAA 483124 Query 288961 ATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAA--TCGC 289018 | ||||| || |||||||| ||||||||||| |||| ||| ||| | |||| Sbjct 483123 AGCTGATTCAGAGTTTGTTCTCTTTCATCATTCCCTCCTCC--AAT-ACCTGTTCCTCGC 483067 Query 289019 TCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTC 289078 | | || ||||||||||||||||| |||| || | | ||| || | ||||| | Sbjct 483066 TGCCTT-----CCAACAGCATCAATTTCATCAACAAACACAATACAAGGTGCATTTTCTT 483012 Query 289079 TCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTAC 289136 | || ||| ||| | |||| || || || || |||| |||||| |||| || || Sbjct 483011 TAGCCTTCTTGAAAAGA--TCTCGAACTCGTGAGGCACCAACGCCAACAAACATCTCCAC 482954 Query 289137 AAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCG 289195 ||| ||||| | || | |||| | || | || ||||| || || | ||| | | Sbjct 482953 AAACTCAGATCCTGAGA-TTGAGAAAAAGGGAACGCCAGCTTCACCAGCAATCGCCTTGG 482895 Query 289196 CCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTG 289255 | || || ||||| || || ||||| || || | ||||| || || |||| | Sbjct 482894 CAAGTAGAGTCTTTCCAGTACCAGGAGGACCAATGAGAAGAACACCTTTAGGTATACGAG 482835 Query 289256 CCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCAT 289315 | ||| || || | | || || |||| | ||| || || | |||| | || | Sbjct 482834 CACCAATAGCAGTAAACCTTTCTGGTTTCTTCAGAAACTCCACCACTTCCATGAAATCCT 482775 Query 289316 ATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||||| |||||| || || || ||| ||||||| Sbjct 482774 GCTTTGCTTCATCAACCCCAGCAACGTCATCAAAAGT 482738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470442838651974