Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq25504 165 1e-34 seq55201 152 6e-31 >seq25504 Length=639989 Score = 165 bits (182), Expect = 1e-34 Identities = 219/298 (73%), Gaps = 7/298 (2%) Strand=Plus/Plus Query 869633 gAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| |||||||| ||||| || || || ||||| | |||| | | || Sbjct 367691 GAGTGGATGTTTTCGATGGCAATCTGAAATCCATAGAAGGCGCGAGCCTCCGGGAGCTGT 367750 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||| ||||||| |||||||| ||||||||| ||||| || || || || || Sbjct 367751 ACCTCCCTCATGAAGCGGCCGGCAAGGTTCTCGAGGACGATTCCATCAGATGCAGCAAAG 367810 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGA---CACCCAGTGG 869809 || || || ||||| ||| |||||||||||||| | |||| || |||||| | Sbjct 367811 AAGGCGAGAACGTGGGTGACGAAGTGGCGCTCGTCAGAGGTGAGGGATTGATCCCAGT-G 367869 Query 869810 ACGG-TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 |||| ||| | |||||| || ||||| || ||||||| ||||| ||||| || || Sbjct 367870 ACGGAGGTCTTGGGAGAGGTCGACTTCCTCTGCTGTCCAGAAGGAGGCTTCGGCTTTCTT 367929 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTT 869925 |||||||||||| | || | ||||| || || || | ||| ||||||| |||||| Sbjct 367930 GTACATCTCCCAGATCTGAGGATAGCGTATCGGAAACA-TACAGAAGCGGTCGGGGTT 367986 Score = 96.9 bits (106), Expect = 4e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| || | |||||| |||| ||| |||||||| || || | ||| Sbjct 367411 ACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGACCGGGCATTAGCCCTCTCTT 367470 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| |||||||| ||||| || || ||||| ||||| ||||| ||| ||||| Sbjct 367471 CTTGAGCCAGAAGATGGCACAGAAGCTACCGGAGAAGAAGATTCCCTCAACGCAAGCAAA 367530 Query 869299 GCCGATGAGCCGCTCGGCAAA 869319 | | || ||||| ||||| Sbjct 367531 CGCAAGGATGCGCTCTGCAAA 367551 >seq55201 Length=1221137 Score = 152 bits (168), Expect = 6e-31 Identities = 214/297 (72%), Gaps = 5/297 (2%) Strand=Plus/Minus Query 869633 gAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||| || ||||||||||| |||||||| || || | |||| | | ||| Sbjct 301142 GAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAGTTGA 301083 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| |||||||| |||||||| ||||| || || ||||| || Sbjct 301082 ACTTCGCGCATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCGGCAAAG 301023 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809 || || |||||||| ||| ||||||||||||||| | | || | |||||| | Sbjct 301022 AAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCCCAGT-G 300964 Query 869810 ACG-GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 ||| ||| |||||| ||||| || || ||||||| || ||||| || || || Sbjct 300963 ACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCTTTCTT 300904 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 |||||||||||| | ||| | |||||||| || || | | ||||||| |||||| Sbjct 300903 GTACATCTCCCAGATCTGCGGATAGCGGATCGGAAACATGCAGAAGCGGTCGGGGTT 300847 Score = 102 bits (112), Expect = 1e-15 Identities = 115/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| |||| |||||| || | ||| |||||||| | |||||||| Sbjct 301422 ACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGACCGGGCATCAAACCGCGCTT 301363 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| |||||||||||||| ||||| ||||| || || || || ||| || || Sbjct 301362 CTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAAATACCTTCAACGCAAGCGAA 301303 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTC-GAGGC 869330 ||| | |||||| ||||| || || ||||| Sbjct 301302 AGCGAGAATCCGCTCAGCAAATGTATCAGAGGC 301270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6101156520479934