Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq25504 154 2e-31 seq55201 140 5e-27 seq38938 87.8 3e-11 >seq25504 Length=639989 Score = 154 bits (170), Expect = 2e-31 Identities = 199/270 (74%), Gaps = 5/270 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || | || |||||| |||||||||||||||| |||||||| ||||| || Sbjct 367736 GCCTCCGGGAGCTGTACCTCCCTCATGAAGCGGCCGGCAAGGTTCTCGAGGACGATTCCA 367795 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || || || || |||||||| ||||| ||| ||||| |||||||| | |||| Sbjct 367796 TCAGATGCAGCAAAGAAGGCGAGAACGTGGGTGACGAAGTGGCGCTCGTCAGAGGTGAGG 367855 Query 796270 GA--GA-CCCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 || || ||||||| || | | || | ||||||||| ||||| || ||||| ||||| Sbjct 367856 GATTGATCCCAGTG-ACGGAGGTCTTGGGAGAGGTCGACTTCCTCTGCTGTCCAGAAGGA 367914 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAA 796385 ||| ||||| || |||||||||||||| ||| | | ||||| || || |||| | || Sbjct 367915 GGCTTCGGCTTTCTTGTACATCTCCCAGATCTGAGGATAGCGTATCGGAAACATACAGAA 367974 Query 796386 GCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 ||| | |||||| | || |||||||| Sbjct 367975 GCGGTCGGGGTTTGGGGCAAGAAGCGGCTC 368004 Score = 143 bits (158), Expect = 4e-28 Identities = 230/327 (70%), Gaps = 10/327 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| || | |||||| ||| ||| |||||||| || || | ||| Sbjct 367411 ACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGACCGGGCATTAGCCCTCTCTT 367470 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| |||||||||||||| || || ||||| ||||| ||||| ||| ||||| Sbjct 367471 CTTGAGCCAGAAGATGGCACAGAAGCTACCGGAGAAGAAGATTCCCTCAACGCAAGCAAA 367530 Query 794460 GCCGACGAGCCGCTCGGCAAAAG-TGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | | || ||||| ||||| | | |||| || |||||| | |||| Sbjct 367531 CGCAAGGATGCGCTCTGCAAATGAATTGGAGGC-------GTCGATCCAACGTAGGGCCC 367583 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 ||| ||||| || |||| || || |||||||| | ||||| ||| |||| Sbjct 367584 ACTGAGCCTTGCGGGCGACGCAGGGGACGGTCTCGATGGCATGGAAGAGATGGGATTTCT 367643 Query 794579 CGACCGG-GTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTT 794637 | || || || |||| ||| || |||| || || ||| |||| |||||||||||| Sbjct 367644 C-ACAGGAATCTTTGATGTATGTTTCGAGAAGAAGGCTGTACATCTCGGAGTGGATGTTT 367702 Query 794638 TCGATGGCGATCTGGAAGCCATAAAAG 794664 |||||||| ||||| || ||||| ||| Sbjct 367703 TCGATGGCAATCTGAAATCCATAGAAG 367729 >seq55201 Length=1221137 Score = 140 bits (154), Expect = 5e-27 Identities = 182/251 (73%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || | ||| || || |||||| |||||||| ||||||||| ||||| || Sbjct 301097 GCCTCCGGGAGTTGAACTTCGCGCATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCA 301038 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||| || |||||||||||||| ||| ||||| ||||||||| | | || Sbjct 301037 TCTGAAGCGGCAAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGT 300978 Query 796270 GAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | | ||||||| | ||| |||||||||||| || || ||||| ||||| Sbjct 300977 GTGTGATCCCAGTGACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAA 300918 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386 ||||| || || |||||||||||||| ||| | | |||||||| || |||| ||| Sbjct 300917 GCCTCTGCTTTCTTGTACATCTCCCAGATCTGCGGATAGCGGATCGGAAACATGCAGAAG 300858 Query 796387 CGATTGGGGTT 796397 || | |||||| Sbjct 300857 CGGTCGGGGTT 300847 Score = 134 bits (148), Expect = 2e-25 Identities = 225/325 (69%), Gaps = 8/325 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| |||| |||||| || ||| |||||||| | |||||||| Sbjct 301422 ACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGACCGGGCATCAAACCGCGCTT 301363 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| |||||||| ||||| ||||| ||||| || || || || ||| || || Sbjct 301362 CTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAAATACCTTCAACGCAAGCGAA 301303 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTC-CAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 ||| | |||||| ||||| || || |||| || ||||| || ||||| Sbjct 301302 AGCGAGAATCCGCTCAGCAAATGTATCAGAGGC-------GTCAATCCAGCGCAGCGCCC 301250 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 ||| ||||| || |||| | || |||||||| ||||| ||| || || | Sbjct 301249 ACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCACGAAAAAGGAGGGATTTTT 301190 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | | ||| |||| ||| || |||| ||| || || | || ||||| ||||||| Sbjct 301189 CCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACATTTCGGAGTGAATGTTTT 301130 Query 794639 CGATGGCGATCTGGAAGCCATAAAA 794663 | ||||||||||| ||||| || || Sbjct 301129 CAATGGCGATCTGAAAGCCGTAGAA 301105 >seq38938 Length=661083 Score = 87.8 bits (96), Expect = 3e-11 Identities = 168/242 (69%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || || ||||| || ||||| || || || ||| |||| || || ||| | | Sbjct 43903 TGAACTTTGTTACCGCCTTAGTGCCCTCAGAAACCGCATGCTTGGCAAGCTCCCCGGGAA 43962 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG- 1485588 | || || || | |||||||||||||||| | ||| |||| |||| |||||| Sbjct 43963 GAACTAGACGGACAGAAGTCTGGATCTCGCGGGAGGTGAT--GGTTG-GCTTCTTAGTGT 44019 Query 1485589 --CGCGCCAGGCGGCCGGCCTCGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAG 1485645 || || ||||| | ||| ||| | || || | |||||||||| ||||| Sbjct 44020 AACGAGCAAGGCGAGATGACTC-CTGCGCAAGCTTCTCAAAGATGTCGTTGATGAACGAA 44078 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 ||||| || ||||| ||| | ||||| || | || ||||||||||| || | ||| Sbjct 44079 TTCATTATGCTCATCGCCTTGCTTGAGATCCCGATATCAGGGTGCACCTGTTTCAATACC 44138 Query 1485706 TT 1485707 || Sbjct 44139 TT 44140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7908491481753978