Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq41242 98.7 8e-16 seq38797 87.8 1e-12 >seq41242 Length=195047 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||||||||| | || ||||| ||||| || | ||| |||| ||| Sbjct 172299 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAGACCATCACACTTGAAGTGGAGAGCTC- 172241 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || ||| ||||| ||||| || ||| | ||| |||||| Sbjct 172240 CGACACCATCGATAATGTGAAAGCTAAGATCCAGGATAAGGAGGGCATCCCCCCGGATCA 172181 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || ||| ||||||||| | || | || |||||||| Sbjct 172180 GCAGAGGCTGATCTTTGCTGGAAAGCAGTTGGAGGACGGCCGCACCCTTGCCGACTACAA 172121 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || ||||| ||||| | ||| | ||| Sbjct 172120 CATCCAGAAGGAATCTACCCTTCACCTTGTG 172090 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||| | || || || ||||| || | ||| |||| ||| Sbjct 146895 ATGCAGATTTTTGTGAAGACTCTTACGGGAAAGACCATCACTTTGGAAGTGGAGAGCTC- 146837 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || || |||||| || ||||| ||| | || ||||| Sbjct 146836 CGATACAATTGATAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCA 146777 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || |||||||| ||||| | | || | || |||||||| Sbjct 146776 GCAGAGGCTTATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTCTTGCAGACTACAA 146717 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||||||||||| ||||| Sbjct 146716 TATTCAAAAGGAATCTAC 146699 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||| | || || || ||||| || | ||| |||| ||| Sbjct 152059 ATGCAGATTTTTGTGAAGACTCTTACGGGAAAGACCATCACTTTGGAAGTGGAGAGCTC- 152001 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || || |||||| || ||||| ||| | || ||||| Sbjct 152000 CGATACAATTGATAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCA 151941 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| || |||||||| ||||| | | || | || |||||||| Sbjct 151940 GCAGAGGCTTATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTCTTGCAGACTACAA 151881 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||||||||||| ||||| Sbjct 151880 TATTCAAAAGGAATCTAC 151863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||| || | |||||||| ||||| ||| | || |||| ||| Sbjct 172071 ATGCAGATTTTCGTCAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTGGAGAGCTC- 172013 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||| ||||| || ||| | ||| ||| || Sbjct 172012 CGACACAATCGATAACGTGAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCA 171953 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || || || ||||| ||||| | | || | || |||||||| Sbjct 171952 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCTGACTACAA 171893 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| |||||||||||||| | ||| | ||| Sbjct 171892 CATCCAAAAGGAGTCTACCCTTCACCTTGTG 171862 >seq38797 Length=1288649 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || || | || || ||||| || ||| | || |||| ||| | Sbjct 629447 ATGCAAATATTTGTGAAGACCCTCACTGGAAAAACTATCACCCTGGAGGTGGAGAGCTCG 629506 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | ||||| |||||| || || || || | || ||| || Sbjct 629507 -GACACAATTGACAACGTAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGACCA 629565 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || ||||| | ||| ||||||||||| ||||||| | || | |||||||| || Sbjct 629566 GCAAAGGCTTATCTTTGCCGGTAAACAGCTTGAGGACGGCCGCACTCTTGCGGACTATAA 629625 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 |||||| || ||||| ||| | ||| Sbjct 629626 CATTCAGAAAGAGTCCACGCTCCAC 629650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398522400705478