Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq41242 158 9e-34
seq38797 131 1e-25
seq40947 114 1e-20
>seq41242
Length=195047
Score = 158 bits (174), Expect = 9e-34
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||| | ||| ||||| | ||| || |||||||| |||||||||||||| || |||
Sbjct 171389 CCACCCCTAAGACGAAGCACAAGATGGAGGGTGGATTCCTTTTGAATGTTATAGTCAGCA 171448
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| ||||| || ||||||||| | || | ||||||||| ||||| ||
Sbjct 171449 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGGTCCGGGGGG 171508
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||| ||||| |||| || || ||| | || | ||||| || || ||
Sbjct 171509 ATGCCCTCCTTGTCCTGTATCTTAGCCTTTACATTGTCGATGGTGTCCGAGCTCTCCACC 171568
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| || || || || ||||| | ||| || ||||||||||||||
Sbjct 171569 TCAAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACAAATATCTGCAT 171615
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|||||||| | ||| ||||| | ||||| || ||||| || || ||||| || || |||
Sbjct 172073 CCTCCCCTAAGACGAAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCA 172132
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| || || | || || |||||| | |||| || ||||||||||| ||
Sbjct 172133 AGGGTGCGGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGG 172192
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||| || || || | || ||| ||| | || | ||||| || || |||
Sbjct 172193 ATGCCCTCCTTATCCTGGATCTTAGCTTTCACATTATCGATGGTGTCGGAGCTCTCCACT 172252
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| || || || ||||| || | |||||| ||||| ||||||||
Sbjct 172253 TCAAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 172299
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|||||||| | ||| || || | || || ||||| || || || ||||||||||| |||
Sbjct 147125 CCTCCCCTGAGACGAAGAACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCA 147184
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || ||| ||||| || ||||||||| | |||| ||| ||||| || || |||
Sbjct 147185 AGAGTACGCCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 147244
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||| || || || | || || || | || | ||||| ||| || ||
Sbjct 147245 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCGGAACTCTCAACC 147304
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| || || || || ||||| | |||||| || || ||||||||
Sbjct 147305 TCAAGGGTGATCGTCTTCCCAGTGAGGGTTTTCACGAAGATCTGCAT 147351
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|||||||| | ||| || || | || || ||||| || || || ||||||||||| |||
Sbjct 152289 CCTCCCCTGAGACGAAGAACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCA 152348
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || ||| ||||| || ||||||||| | |||| ||| ||||| || || |||
Sbjct 152349 AGAGTACGCCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 152408
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||| || || || | || || || | || | ||||| ||| || ||
Sbjct 152409 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCGGAACTCTCAACC 152468
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| || || || || ||||| | |||||| || || ||||||||
Sbjct 152469 TCAAGGGTGATCGTCTTCCCAGTGAGGGTTTTCACGAAGATCTGCAT 152515
Score = 118 bits (130), Expect = 8e-22
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643
||||| || ||||| ||||||||||| || || || | ||| || || || || ||
Sbjct 171185 TGAAGGGTCGATTCCTTTTGAATGTTGTAGTCTGCCAGGGTACGGCCGTCCTCCAGCTGC 171244
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
||||| ||| ||||||| |||||||| || || || || ||||| ||||| || | |||
Sbjct 171245 TTGCCGGCAAATATCAACCTTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATTTTG 171304
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
|| ||| | || | || ||||| || || ||||| || || ||||| |||||
Sbjct 171305 GCCTTCACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATGGTTTTTCCAGTG 171364
Query 29764 AAGGTTTTAACAAATATCTGCAT 29786
| ||| || ||||| ||||||||
Sbjct 171365 AGGGTCTTGACAAAGATCTGCAT 171387
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | || || || ||||| |||||||| || || || |||| |||||
Sbjct 146680 ACGGAGGACAAGGTGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCC 146739
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || ||||| |||||| | || | || |||||||| || ||||| ||||||||
Sbjct 146740 ATCCTCAAGCTGTTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTT 146799
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||| || | ||| || || | || | || || || || ||||| | ||| ||
Sbjct 146800 GTCCTGGATCTTTGCCTTCACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGAT 146859
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || | || || ||||| ||||||||
Sbjct 146860 GGTCTTTCCCGTAAGAGTCTTCACAAAAATCTGCAT 146895
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | || || || ||||| |||||||| || || || |||| |||||
Sbjct 151844 ACGGAGGACAAGGTGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCC 151903
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || ||||| |||||| | || | || |||||||| || ||||| ||||||||
Sbjct 151904 ATCCTCAAGCTGTTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTT 151963
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||| || | ||| || || | || | || || || || ||||| | ||| ||
Sbjct 151964 GTCCTGGATCTTTGCCTTCACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGAT 152023
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || | || || ||||| ||||||||
Sbjct 152024 GGTCTTTCCCGTAAGAGTCTTCACAAAAATCTGCAT 152059
>seq38797
Length=1288649
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|||||||||| ||| || |||| ||| || ||||| || || || ||||| ||||| |||
Sbjct 628989 CCTCCCCTCAGACGGAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 628930
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| || || || ||||| ||| | |||| || ||||| ||||| ||
Sbjct 628929 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 628870
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|||||||||||||| || | || || || | || | |||||||| || ||
Sbjct 628869 ATACCCTCTTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACC 628810
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || |||||||| | || || || || ||||||||
Sbjct 628809 TCTAGGGTGATCGTCTTGCCAGTGAGAGTCTTTACGAAGATCTGCAT 628763
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|||||||||| ||| || || | |||||| ||||| || || || ||||| ||||| |||
Sbjct 628761 CCTCCCCTCAGACGGAGAACTAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 628702
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| || || |||||||| ||| | |||| ||||||||||| || ||
Sbjct 628701 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGG 628642
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||| ||||| || | || || || | || | ||| || ||| || ||
Sbjct 628641 ATGCCCTCCTTGTCCTGGATCTTGGCCTTTACGTTGTCAATAGTATCCGAACTCTCCACC 628582
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || ||||| || | || || || || ||||||||
Sbjct 628581 TCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 628535
Score = 123 bits (136), Expect = 2e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643
|| |||||||| ||||| ||||||||||| ||||||| ||||| || || || |||
Sbjct 629649 TGGAGCGTGGACTCTTTCTGAATGTTATAGTCCGCAAGAGTGCGGCCGTCCTCAAGCTGT 629590
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| || ||| | || | |||||||| ||||| ||||| ||||| ||||| || | |||
Sbjct 629589 TTACCGGCAAAGATAAGCCTTTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTT 629530
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
|| || | || | ||||| || || || || || || |||||||| |||||
Sbjct 629529 GCCTTTACGTTGTCAATTGTGTCCGAGCTCTCCACCTCCAGGGTGATAGTTTTTCCAGTG 629470
Query 29764 AAGGTTTTAACAAATATCTGCAT 29786
| ||| || |||||||| |||||
Sbjct 629469 AGGGTCTTCACAAATATTTGCAT 629447
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|||||||||| ||| || || || ||||| || || || ||||||||||| || |||||
Sbjct 629217 CCTCCCCTCAGACGGAGGACTAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCCGCC 629158
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| |||||| ||| || || || ||||| ||| |||||| || || || ||||| ||
Sbjct 629157 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAATATCAGCCTCTGTTGGTCCGGGGGG 629098
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||| ||||| || | || || || | || | |||||||| || ||
Sbjct 629097 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACC 629038
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || || ||||| |||| || || || || ||||||||
Sbjct 629037 TCTAAGGTGATGGTCTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 628991
>seq40947
Length=4604
Score = 114 bits (126), Expect = 1e-20
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643
||||| || |||||||| || || || || ||||||| ||||| || || || ||
Sbjct 1883 TGAAGGGTTGATTCTTTCTGTATATTGTAGTCCGCAAGCGTGCGGCCGTCCTCAAGCTGC 1824
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| | || | |||||||||||||||||||| ||||| || ||||| ||| ||
Sbjct 1823 TTACCAGCAAAGATGAGCCTTTGCTGATCCGGCGGAATCCCCTCCTTATCTTG-AATCTT 1765
Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
| || ||| | || | || || || || || || || || || ||||| |||||
Sbjct 1764 CGACTTCACATTCTCAATTGTATCCGAGCTCTCCACGTCCAGGGTGATCGTTTTACCAGT 1705
Query 29763 TAAGGTTTTAACAAATATCTGCATT 29787
| || |||||||| |||||||||
Sbjct 1704 AAGAGTCTTAACAAAAATCTGCATT 1680
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||| | ||| || || | || || || || || || || ||||| || || |
Sbjct 1223 CCTCCCCGAAGACGAAGAACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1164
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| || || || || ||||| || || |||||| || ||||| ||||| ||
Sbjct 1163 AGGGTTCGGCCGTCCTCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGG 1104
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTT-TCTACAGTGTCAGAAAGTTCTAC 29738
|| ||||| ||||| || | |||| || | | ||| || | ||||| ||| || ||
Sbjct 1103 ATTCCCTCCTTGTCCTGGA-TTTTGGTCTTAACGTTCTCGATCGTGTCGGAACTCTCCAC 1045
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| || || || ||||| || | ||| ||||| |||||||||||
Sbjct 1044 CTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTAACGAATATCTGCAT 997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 384876935389182
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