Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq72902 98.7 4e-16 seq20738 98.7 4e-16 seq49543 87.8 7e-13 >seq72902 Length=152221 Score = 98.7 bits (108), Expect = 4e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 36924 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 36983 Query 50170 CTGCTCTACTCCGC 50183 |||||||||||||| Sbjct 36984 CTGCTCTACTCCGC 36997 >seq20738 Length=132935 Score = 98.7 bits (108), Expect = 4e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| || Sbjct 118906 GTTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAA 118847 Query 50170 CTGCTCTACTCCGC 50183 |||||||||||||| Sbjct 118846 CTGCTCTACTCCGC 118833 >seq49543 Length=241926 Score = 87.8 bits (96), Expect = 7e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 |||| |||| ||||||||||||| | |||| ||| ||||||||| | |||||||| || Sbjct 65298 GTTGAGGAGATAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGTGAGCTACCAAA 65239 Query 50170 CTGCTCTACTCCGCATTA 50187 ||||||||||||||| || Sbjct 65238 CTGCTCTACTCCGCACTA 65221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181445984066724