Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq13232 86.0 8e-12 >seq13232 Length=903684 Score = 86.0 bits (94), Expect = 8e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTT-CAGGAATGGCCCAAAAAGGAACTTGTGG 193498 ||||| ||| | || || ||||||||| || |||| |||||| |||| || ||| || Sbjct 844837 CGTATTCCTCAGATTGGAGATAAATTTAGTAGCAGGCATGGCC-AAAAGGGGACTGTGGG 844779 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 ||||| ||| | || ||||||||||||| || | | ||| || || || ||||| Sbjct 844778 TATGACTTACACTCAGGAAGATATGCCATGGACTGTTGAAGGCATTACGCCTGACATTAT 844719 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATTAATCAAATTATTGCCACTGTTAT 193618 | | ||||| || ||||| || ||||||| ||| ||| |||||| | |||| Sbjct 844718 TGTGAATCCTCATGCCATTCCCTCTCGAATGACTATTGGTCAGCTTATTGAGTGTATTAT 844659 Query 193619 GGGCAA 193624 ||| || Sbjct 844658 GGGAAA 844653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634598778532560