Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq38797 149 1e-30
seq41242 145 1e-29
seq40947 145 1e-29
seq15016 113 9e-20
>seq38797
Length=1288649
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| |||| ||| ||||||| || || || || || ||||| || || |||||||
Sbjct 628761 CCTCCCCTCAGACGGAGAACTAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 628702
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || ||||| || |||||||| || ||||| |||||||||||
Sbjct 628701 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGG 628642
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || ||||| || || ||||| || ||||| || ||||| ||||| | || ||
Sbjct 628641 ATGCCCTCCTTGTCCTGGATCTTGGCCTTTACGTTGTCAATAGTATCCGAACTCTCCACC 628582
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || ||||||||||| || | ||||| || || ||||||||
Sbjct 628581 TCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 628535
Score = 116 bits (128), Expect = 7e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| |||| ||| ||||| | || || || || || ||||| || || |||||||
Sbjct 628989 CCTCCCCTCAGACGGAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 628930
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || || || || |||||||| || || || || || || ||
Sbjct 628929 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 628870
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762
|| || || || || || ||||| || || || || ||||| || ||| || | || ||
Sbjct 628869 ATACCCTCTTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAG-AGCTCTCAAC 628811
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || ||||||||||| || | |||||||| || ||||||||
Sbjct 628810 CTCTAGGGTGATCGTCTTGCCAGTGAGAGTCTTTACGAAGATCTGCAT 628763
>seq41242
Length=195047
Score = 145 bits (160), Expect = 1e-29
Identities = 164/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | ||| || |||||||| || || ||||| || || | ||| | | ||
Sbjct 146680 ACGGAGGACAAGGTGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCC 146739
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || ||||||||||||||||| || || || ||||||||||| || || || ||
Sbjct 146740 ATCCTCAAGCTGTTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTT 146799
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773
|| || |||||||| || || || ||||| ||||| || | || ||||||||||| |
Sbjct 146800 GTCCTGGATCTTTGCCTTCACGTTATCAATTGTATC-GGAGCTCTCCACTTCCAAAGTGA 146858
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| || || | ||||| ||||| ||||||||
Sbjct 146859 TGGTCTTTCCCGTAAGAGTCTTCACAAAAATCTGCAT 146895
Score = 145 bits (160), Expect = 1e-29
Identities = 164/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | ||| || |||||||| || || ||||| || || | ||| | | ||
Sbjct 151844 ACGGAGGACAAGGTGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCC 151903
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || ||||||||||||||||| || || || ||||||||||| || || || ||
Sbjct 151904 ATCCTCAAGCTGTTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTT 151963
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773
|| || |||||||| || || || ||||| ||||| || | || ||||||||||| |
Sbjct 151964 GTCCTGGATCTTTGCCTTCACGTTATCAATTGTATC-GGAGCTCTCCACTTCCAAAGTGA 152022
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| || || | ||||| ||||| ||||||||
Sbjct 152023 TGGTCTTTCCCGTAAGAGTCTTCACAAAAATCTGCAT 152059
Score = 141 bits (156), Expect = 2e-28
Identities = 163/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | || || || ||||| ||||| ||||| ||||| | || | | |||
Sbjct 170944 ACGGAGTACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAATCTGCAAGGGTGCGACC 171003
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || ||||||||||| |||||||| || || |||||||| || || || |||||
Sbjct 171004 ATCCTCAAGCTGTTTTCCAGCGAAGATTAGCCTCTGCTGATCTGGCGGGATCCCCTCCTT 171063
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773
|| || |||||||| || ||||| || || || || || | |||||||| || || |
Sbjct 171064 GTCCTGGATCTTTGCCTTGACATTATCGATGGTGTC-CGAGCTCTCTACTTCTAAGGTGA 171122
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| || || | |||||| |||||||| |||||
Sbjct 171123 TGGTCTTTCCAGTAAGCGTCTTCACAAATATTTGCAT 171159
Score = 125 bits (138), Expect = 1e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| || | ||| ||||| | ||| || || || || ||||| || ||||||||||
Sbjct 147125 CCTCCCCTGAGACGAAGAACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCA 147184
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || || || || || || ||||||||||| ||||| || || ||||| ||
Sbjct 147185 AGAGTACGCCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 147244
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || |||||||| || ||||| || || || || ||||| || || | || ||
Sbjct 147245 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCGGAACTCTCAACC 147304
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || |||||||| || || | || || || || ||||||||
Sbjct 147305 TCAAGGGTGATCGTCTTCCCAGTGAGGGTTTTCACGAAGATCTGCAT 147351
Score = 125 bits (138), Expect = 1e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| || | ||| ||||| | ||| || || || || ||||| || ||||||||||
Sbjct 152289 CCTCCCCTGAGACGAAGAACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCA 152348
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || || || || || || ||||||||||| ||||| || || ||||| ||
Sbjct 152349 AGAGTACGCCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 152408
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || |||||||| || ||||| || || || || ||||| || || | || ||
Sbjct 152409 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCGGAACTCTCAACC 152468
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || |||||||| || || | || || || || ||||||||
Sbjct 152469 TCAAGGGTGATCGTCTTCCCAGTGAGGGTTTTCACGAAGATCTGCAT 152515
Score = 125 bits (138), Expect = 1e-23
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| || | ||| || || | ||| || |||||||| ||||| || || || || |
Sbjct 172073 CCTCCCCTAAGACGAAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCA 172132
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | ||||| || | || |||||||||||||| || || || ||||| || ||
Sbjct 172133 AGGGTGCGGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGG 172192
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762
|| || |||||||| || ||||| ||||| ||||| || || || || || | || ||
Sbjct 172193 ATGCCCTCCTTATCCTGGATCTTAGCTTTCACATTATCGATGGTGTC-GGAGCTCTCCAC 172251
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||| | || || |||||||| || | || || ||||| ||||||||
Sbjct 172252 TTCAAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 172299
Score = 114 bits (126), Expect = 3e-20
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || || | ||| || || | || || || ||||| || || || ||||| ||||
Sbjct 171387 TACCACCCCTAAGACGAAGCACAAGATGGAGGGTGGATTCCTTTTGAATGTTATAGTCAG 171446
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| | | || || || || || || ||||||||||| |||||||| || || || |
Sbjct 171447 CAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGGTCCGGGG 171506
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760
| || || ||||| || || ||||| || |||||||| || || || || || | ||
Sbjct 171507 GGATGCCCTCCTTGTCCTGTATCTTAGCCTTTACATTGTCGATGGTGTC-CGAGCTCTCC 171565
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || | || || ||||| || || | ||||| ||||||||||||||
Sbjct 171566 ACCTCAAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACAAATATCTGCAT 171615
Score = 89.7 bits (98), Expect = 1e-12
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| || | || || || | ||| || ||||| || || || || || || ||||
Sbjct 171845 CCTCCCCTAAGGCGGAGCACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCA 171904
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || || || || || || ||||| ||||| | || || || || || ||
Sbjct 171905 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGA 171964
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762
|| || |||||||| || ||||| || || || || || || || || || | || ||
Sbjct 171965 ATGCCCTCCTTATCCTGGATCTTAGCCTTCACGTTATCGATTGTGTCGG-AGCTCTCCAC 172023
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || ||||||||||| | ||||| || || ||||||||
Sbjct 172024 CTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 172071
>seq40947
Length=4604
Score = 145 bits (160), Expect = 1e-29
Identities = 164/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| ||||| | ||| || || ||||||||||||||||| || || | || | | |||
Sbjct 1895 CGAAGAACGAGGTGAAGGGTTGATTCTTTCTGTATATTGTAGTCCGCAAGCGTGCGGCCG 1836
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||||||||| || ||||| ||||| || || || || ||||||
Sbjct 1835 TCCTCAAGCTGCTTACCAGCAAAGATGAGCCTTTGCTGATCCGGCGGAATCCCCTCCTTA 1776
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
||||||||||| | || ||||| ||||| ||||| || | || || |||| || ||
Sbjct 1775 TCTTGAATCTTCGACTTCACATTCTCAATTGTATC-CGAGCTCTCCACGTCCAGGGTGAT 1717
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||| || || || | ||||| ||||| |||||||||
Sbjct 1716 CGTTTTACCAGTAAGAGTCTTAACAAAAATCTGCATT 1680
Score = 116 bits (128), Expect = 7e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || | ||| || || ||||| ||||| ||||| || |||||||| ||| ||
Sbjct 1667 CGGAGCACAAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCAGATAGGGTTCGGCCA 1608
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || || || |||||||| ||||| || || |||| || ||||||||
Sbjct 1607 TCCTCAAGCTGCTTACCGGCGAAGATTAGCCTTTGCTGGTCCGGAGCGATGCCTTCCTTG 1548
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774
|| || ||||| | || || || ||||| || || || | || || || | || ||
Sbjct 1547 TCCTGGATCTTCGACTTCACGTTCTCAATGGTGTCGG-AGCTCTCCACCTCGAGTGTAAT 1489
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||||||||| | || || ||||| ||||||||
Sbjct 1488 GGTCTTGCCTGTGAGGGTTTTGACAAAGATCTGCAT 1453
Score = 104 bits (114), Expect = 5e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
||||| | | ||| ||||| | ||| || ||||| || ||||| || || || || ||
Sbjct 1223 CCTCCCCGAAGACGAAGAACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1164
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| ||| ||||| || || ||||| || || || || || || || || || || ||
Sbjct 1163 AGGGTTCGGCCGTCCTCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGG 1104
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
||||| ||||| || || || || | || || || || ||||| || | || ||
Sbjct 1103 ATTCCCTCCTTGTCCTGGATTTTGGTCTTAACGTTCTCGATCGTGTCGGAACTCTCCACC 1044
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || |||||||| || | ||||| || |||||||||||
Sbjct 1043 TCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTAACGAATATCTGCAT 997
>seq15016
Length=583550
Score = 113 bits (124), Expect = 9e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| ||||| | ||| || || ||||| ||||| ||||| ||||| | || | | |||
Sbjct 437744 CGGAGAACGAGGTGAAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCG 437685
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || || || ||||||| | ||||||||||| || || || ||||||
Sbjct 437684 TCCTCAAGCTGCTTCCCGGCGAAGATTAAGCGCTGTTGATCTGGCGGAATGCCCTCCTTA 437625
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || || ||||| || || || || || |||||| | || || || | || |||
Sbjct 437624 TCCTGGATTTTTGCCTTAACGTTGTCGATTGTATCAGAGGACTCCACCTCGAGGGTGATC 437565
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || | || || || || ||||||||
Sbjct 437564 GTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 437530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 980910117553778
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