Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq38797 149 1e-30 seq41242 145 1e-29 seq40947 145 1e-29 seq15016 113 9e-20 >seq38797 Length=1288649 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| ||| ||||||| || || || || || ||||| || || ||||||| Sbjct 628761 CCTCCCCTCAGACGGAGAACTAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 628702 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| || |||||||| || ||||| ||||||||||| Sbjct 628701 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGG 628642 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || ||||| || ||||| ||||| | || || Sbjct 628641 ATGCCCTCCTTGTCCTGGATCTTGGCCTTTACGTTGTCAATAGTATCCGAACTCTCCACC 628582 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | ||||| || || |||||||| Sbjct 628581 TCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 628535 Score = 116 bits (128), Expect = 7e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| ||| ||||| | || || || || || ||||| || || ||||||| Sbjct 628989 CCTCCCCTCAGACGGAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 628930 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || |||||||| || || || || || || || Sbjct 628929 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 628870 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || || || || || ||||| || || || || ||||| || ||| || | || || Sbjct 628869 ATACCCTCTTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAG-AGCTCTCAAC 628811 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | |||||||| || |||||||| Sbjct 628810 CTCTAGGGTGATCGTCTTGCCAGTGAGAGTCTTTACGAAGATCTGCAT 628763 >seq41242 Length=195047 Score = 145 bits (160), Expect = 1e-29 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || |||||||| || || ||||| || || | ||| | | || Sbjct 146680 ACGGAGGACAAGGTGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCC 146739 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || ||||||||||||||||| || || || ||||||||||| || || || || Sbjct 146740 ATCCTCAAGCTGTTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTT 146799 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || |||||||| || || || ||||| ||||| || | || ||||||||||| | Sbjct 146800 GTCCTGGATCTTTGCCTTCACGTTATCAATTGTATC-GGAGCTCTCCACTTCCAAAGTGA 146858 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || | ||||| ||||| |||||||| Sbjct 146859 TGGTCTTTCCCGTAAGAGTCTTCACAAAAATCTGCAT 146895 Score = 145 bits (160), Expect = 1e-29 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || |||||||| || || ||||| || || | ||| | | || Sbjct 151844 ACGGAGGACAAGGTGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCC 151903 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || ||||||||||||||||| || || || ||||||||||| || || || || Sbjct 151904 ATCCTCAAGCTGTTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTT 151963 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || |||||||| || || || ||||| ||||| || | || ||||||||||| | Sbjct 151964 GTCCTGGATCTTTGCCTTCACGTTATCAATTGTATC-GGAGCTCTCCACTTCCAAAGTGA 152022 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || | ||||| ||||| |||||||| Sbjct 152023 TGGTCTTTCCCGTAAGAGTCTTCACAAAAATCTGCAT 152059 Score = 141 bits (156), Expect = 2e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || || || ||||| ||||| ||||| ||||| | || | | ||| Sbjct 170944 ACGGAGTACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAATCTGCAAGGGTGCGACC 171003 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || ||||||||||| |||||||| || || |||||||| || || || ||||| Sbjct 171004 ATCCTCAAGCTGTTTTCCAGCGAAGATTAGCCTCTGCTGATCTGGCGGGATCCCCTCCTT 171063 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || || |||||||| || ||||| || || || || || | |||||||| || || | Sbjct 171064 GTCCTGGATCTTTGCCTTGACATTATCGATGGTGTC-CGAGCTCTCTACTTCTAAGGTGA 171122 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || | |||||| |||||||| ||||| Sbjct 171123 TGGTCTTTCCAGTAAGCGTCTTCACAAATATTTGCAT 171159 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| ||||| | ||| || || || || ||||| || |||||||||| Sbjct 147125 CCTCCCCTGAGACGAAGAACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCA 147184 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || || || ||||||||||| ||||| || || ||||| || Sbjct 147185 AGAGTACGCCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 147244 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || ||||| || || || || ||||| || || | || || Sbjct 147245 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCGGAACTCTCAACC 147304 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || |||||||| || || | || || || || |||||||| Sbjct 147305 TCAAGGGTGATCGTCTTCCCAGTGAGGGTTTTCACGAAGATCTGCAT 147351 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| ||||| | ||| || || || || ||||| || |||||||||| Sbjct 152289 CCTCCCCTGAGACGAAGAACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCA 152348 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || || || ||||||||||| ||||| || || ||||| || Sbjct 152349 AGAGTACGCCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGA 152408 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || |||||||| || ||||| || || || || ||||| || || | || || Sbjct 152409 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCGGAACTCTCAACC 152468 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || |||||||| || || | || || || || |||||||| Sbjct 152469 TCAAGGGTGATCGTCTTCCCAGTGAGGGTTTTCACGAAGATCTGCAT 152515 Score = 125 bits (138), Expect = 1e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| || || | ||| || |||||||| ||||| || || || || | Sbjct 172073 CCTCCCCTAAGACGAAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCA 172132 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || | || |||||||||||||| || || || ||||| || || Sbjct 172133 AGGGTGCGGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGG 172192 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || |||||||| || ||||| ||||| ||||| || || || || || | || || Sbjct 172193 ATGCCCTCCTTATCCTGGATCTTAGCTTTCACATTATCGATGGTGTC-GGAGCTCTCCAC 172251 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | || || |||||||| || | || || ||||| |||||||| Sbjct 172252 TTCAAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 172299 Score = 114 bits (126), Expect = 3e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || || | ||| || || | || || || ||||| || || || ||||| |||| Sbjct 171387 TACCACCCCTAAGACGAAGCACAAGATGGAGGGTGGATTCCTTTTGAATGTTATAGTCAG 171446 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||||||||| |||||||| || || || | Sbjct 171447 CAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGGTCCGGGG 171506 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || || ||||| || || ||||| || |||||||| || || || || || | || Sbjct 171507 GGATGCCCTCCTTGTCCTGTATCTTAGCCTTTACATTGTCGATGGTGTC-CGAGCTCTCC 171565 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | || || ||||| || || | ||||| |||||||||||||| Sbjct 171566 ACCTCAAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACAAATATCTGCAT 171615 Score = 89.7 bits (98), Expect = 1e-12 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | || || || | ||| || ||||| || || || || || || |||| Sbjct 171845 CCTCCCCTAAGGCGGAGCACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCA 171904 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || ||||| ||||| | || || || || || || Sbjct 171905 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGA 171964 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || |||||||| || ||||| || || || || || || || || || | || || Sbjct 171965 ATGCCCTCCTTATCCTGGATCTTAGCCTTCACGTTATCGATTGTGTCGG-AGCTCTCCAC 172023 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||| | ||||| || || |||||||| Sbjct 172024 CTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 172071 >seq40947 Length=4604 Score = 145 bits (160), Expect = 1e-29 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || || ||||||||||||||||| || || | || | | ||| Sbjct 1895 CGAAGAACGAGGTGAAGGGTTGATTCTTTCTGTATATTGTAGTCCGCAAGCGTGCGGCCG 1836 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || ||||| ||||| || || || || |||||| Sbjct 1835 TCCTCAAGCTGCTTACCAGCAAAGATGAGCCTTTGCTGATCCGGCGGAATCCCCTCCTTA 1776 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 ||||||||||| | || ||||| ||||| ||||| || | || || |||| || || Sbjct 1775 TCTTGAATCTTCGACTTCACATTCTCAATTGTATC-CGAGCTCTCCACGTCCAGGGTGAT 1717 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| || || || | ||||| ||||| ||||||||| Sbjct 1716 CGTTTTACCAGTAAGAGTCTTAACAAAAATCTGCATT 1680 Score = 116 bits (128), Expect = 7e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || ||||| ||||| ||||| || |||||||| ||| || Sbjct 1667 CGGAGCACAAGGTGAAGGGTGGATTCCTTCTGGATATTGTAGTCAGATAGGGTTCGGCCA 1608 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || |||||||| ||||| || || |||| || |||||||| Sbjct 1607 TCCTCAAGCTGCTTACCGGCGAAGATTAGCCTTTGCTGGTCCGGAGCGATGCCTTCCTTG 1548 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||| | || || || ||||| || || || | || || || | || || Sbjct 1547 TCCTGGATCTTCGACTTCACGTTCTCAATGGTGTCGG-AGCTCTCCACCTCGAGTGTAAT 1489 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| | || || ||||| |||||||| Sbjct 1488 GGTCTTGCCTGTGAGGGTTTTGACAAAGATCTGCAT 1453 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| | ||| || ||||| || ||||| || || || || || Sbjct 1223 CCTCCCCGAAGACGAAGAACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1164 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| ||||| || || ||||| || || || || || || || || || || || Sbjct 1163 AGGGTTCGGCCGTCCTCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGG 1104 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || || || || | || || || || ||||| || | || || Sbjct 1103 ATTCCCTCCTTGTCCTGGATTTTGGTCTTAACGTTCTCGATCGTGTCGGAACTCTCCACC 1044 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | ||||| || ||||||||||| Sbjct 1043 TCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTAACGAATATCTGCAT 997 >seq15016 Length=583550 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || || ||||| ||||| ||||| ||||| | || | | ||| Sbjct 437744 CGGAGAACGAGGTGAAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCG 437685 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||||| | ||||||||||| || || || |||||| Sbjct 437684 TCCTCAAGCTGCTTCCCGGCGAAGATTAAGCGCTGTTGATCTGGCGGAATGCCCTCCTTA 437625 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || ||||| || || || || || |||||| | || || || | || ||| Sbjct 437624 TCCTGGATTTTTGCCTTAACGTTGTCGATTGTATCAGAGGACTCCACCTCGAGGGTGATC 437565 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || || || || |||||||| Sbjct 437564 GTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 437530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980910117553778