Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq41242 87.8 1e-12 seq38797 82.4 5e-11 seq15016 82.4 5e-11 >seq41242 Length=195047 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||| || ||||| |||| ||||| || ||||| ||||| Sbjct 172109 TCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAACTGCTTTCCAGCAAAG 172168 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| | ||||||||| | || | || || || || || || ||||| ||| Sbjct 172169 ATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTATCCTGGATCTTAGCTTTCA-CATT 172227 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||||| ||||| |||| ||||| || || || || | ||||| || Sbjct 172228 ATCGATGGTGTCGGAGCTCTCCACTTCAAGTGTGATGGTCTTGCCGGTGAGGGTTTTGAC 172287 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 172288 AAAGATCTGCAT 172299 >seq38797 Length=1288649 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | |||| ||| || ||| ||| || || ||||||||||| | Sbjct 628989 CCTCCCCTCAGACGGAGAACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 628930 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || || |||||||| |||| | |||||| || | || Sbjct 628929 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 628870 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||| |||||||| || || | | ||| | ||| | |||||| ||| || Sbjct 628869 ATACCCTCTTTGTCCTGGATCTT-GGCCTTAACGTTGTCAATGGTGTCAGAGCT---CTC 628814 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | |||||||| || || || | || ||||| ||||||||||| Sbjct 628813 AACCTCTAGGGTGATCGTCTTGCCAGTGAGAGTCTTTACGAAGATCTGCAT 628763 >seq15016 Length=583550 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || || |||||||||| ||| || || |||| || | || || ||||| || Sbjct 437720 TCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCGAAG 437661 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || || ||||| |||||| |||| | || || || || ||||| || | ||| | Sbjct 437660 ATTAAGCGCTGTTGATCTGGCGGAATGCCCTCCTTATCCTGGATTTT-TGCCTTAACGTT 437602 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | || || || ||||| || | |||||||| || || |||| ||||| || Sbjct 437601 GTCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTGAC 437542 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 437541 GAAGATCTGCAT 437530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328411948755840