Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq41242 84.2 2e-11 seq15016 84.2 2e-11 seq38797 82.4 7e-11 >seq41242 Length=195047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || |||||||| |||||||| | || || ||| || |||||||| || | | Sbjct 146702 GATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCA 146761 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||||||||| ||||| ||||| || || ||| |||| Sbjct 146762 AAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCACG 146821 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| ||||||||| | || | || || || || ||||| || Sbjct 146822 TTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTC 146881 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 146882 ACAAAAATCTGCAT 146895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || |||||||| |||||||| | || || ||| || |||||||| || | | Sbjct 151866 GATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCA 151925 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||||||||| ||||| ||||| || || ||| |||| Sbjct 151926 AAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCACG 151985 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| ||||||||| | || | || || || || ||||| || Sbjct 151986 TTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTC 152045 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 152046 ACAAAAATCTGCAT 152059 >seq15016 Length=583550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || || ||||| ||| | |||||| || || ||||| || |||| Sbjct 437723 GATTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCGGCG 437664 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||||| |||||||||||||| || ||||| || ||||| |||||| || | Sbjct 437663 AAGATTAAGCGCTGTTGATCTGGCGGAATGCCCTCCTTATCCTGGATTTTTGCCTTAACG 437604 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | | |||||| |||| || | ||| || || || || ||||| Sbjct 437603 TTGTCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTG 437544 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 437543 ACGAAGATCTGCAT 437530 >seq38797 Length=1288649 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | | ||||| || || |||||||| || | ||| || |||||| Sbjct 628744 AACTAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCTTC 628685 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||| |||| | |||| || | || ||||||||||| ||||| || || || Sbjct 628684 AAGCTGTTTGCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGGATGCCCTCCTTGTCCTG 628625 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | || | |||||| | |||||| |||| || | ||| || Sbjct 628624 GATCTTGGCCTTTACGTTGTCAATAGTATCCGAACTCTCCACCTCGAGGGTGATCGTCTT 628565 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || | ||| |||||||| Sbjct 628564 GCCGGTGAGAGTCTTCACGAAGATCTGCAT 628535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476176876128720