Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq55201 253 3e-61 seq25504 250 4e-60 seq20799 89.7 7e-12 >seq55201 Length=1221137 Score = 253 bits (280), Expect = 3e-61 Identities = 389/548 (71%), Gaps = 15/548 (3%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| ||||||| | |||| || |||||||| | || ||| ||||| |||||| | Sbjct 300847 AACCCCGACCGCTTCTGCATGTTTCCGATCCGCTATCCGCAGATCTGGGAGATGTACAAG 300906 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853 |||| | ||||| ||||| ||||| || || |||||||||||| ||| | || Sbjct 300907 AAAG-CAGAGGCTTCCTTCTGGACTGCGGAAGAGGTCGACCTCTCACAAGACCTGCGTCA 300965 Query 1455854 CTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTT 1455910 ||||| | || | | |||||||||||| ||| ||| |||||||||||||| || Sbjct 300966 CTGGGATCACACACTTACCTCCGACGAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTT 301025 Query 1455911 TCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCC 1455970 | ||||| ||||| ||||| |||||||| |||||||| || ||| || || | Sbjct 301026 T-GCCGCTTCAGATGGTATCGTCCTTGAGAACCTAGCCGGCCGATTCATGCGCGAAGTTC 301084 Query 1455971 AATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTG 1456030 || | || ||||| || || ||||| || ||||||||||| |||||||| ||||| | Sbjct 301085 AACTCCCGGAGGCTCGCGCATTCTACGGCTTTCAGATCGCCATTGAAAACATTCACTCCG 301144 Query 1456031 AAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT 1456090 ||| || || || |||| || ||| |||| ||| | || || || ||| | Sbjct 301145 AAATGTATAGTCTTCTCCTCGAGACTTACATCAAAGACTCAAAGGAAAAATCCCTCCTTT 301204 Query 1456091 TTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA 1456150 |||| |||||||| || | || | || ||||| | |||||| || |||| Sbjct 301205 TTCGTGCCATCGAGACCATCCCCTGCGTCGCTCGCAAGGCTCAGTGGGCGCTGCGCTGGA 301264 Query 1456151 TCAACAAGGAGGGCCTC-GACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAG 1456207 | || ||||| || || ||||| |||||| | ||| || || |||| || Sbjct 301265 TTGAC-------GCCTCTGATACATTTGCTGAGCGGATTCTCGCTTTCGCTTGCGTTGAA 301317 Query 1456208 GGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATG 1456267 || || || ||||| ||||| |||||||||||||| ||||||||||||||||| | ||| Sbjct 301318 GGTATTTTCTTCTCTGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATG 301377 Query 1456268 CCCGGTCT 1456275 |||||||| Sbjct 301378 CCCGGTCT 301385 >seq25504 Length=639989 Score = 250 bits (276), Expect = 4e-60 Identities = 408/571 (71%), Gaps = 25/571 (4%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGC 1455773 |||||||| || || | | | ||||| |||||| ||| |||| || || ||||| | | Sbjct 368004 GAGCCGCTTCTTGCCCCAAACCCCGA-CCGCTTCTGTA-TGTTTCCGATACGCTATCCTC 367947 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 ||| ||||| |||||| | |||| |||| |||||||| ||||| || ||||| |||||| Sbjct 367946 AGATCTGGGAGATGTACAAGAAAG-CCGAAGCCTCCTTCTGGACAGCAGAGGAAGTCGAC 367888 Query 1455834 CTCGGCGCCGACA-CGGTCCACTGGGTG---TCGCTGAGCGACGACGAGCGCCATTTCAT 1455889 ||| | ||| | ||| |||||| || || | | ||||||||||| ||| | Sbjct 367887 CTCTCCCAAGACCTCCGTC-ACTGGGATCAATCCCTCACCTCTGACGAGCGCCACTTCGT 367829 Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949 || ||||| |||||||| ||| || || ||||| ||||| ||||||||| |||| Sbjct 367828 CACCCACGTTCTCGCCTTCTTT-GCTGCATCTGATGGAATCGTCCTCGAGAACCTTGCCG 367770 Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009 ||||||| |||| ||||| || | || ||||| || || || || || ||||| | Sbjct 367769 GCCGCTTCATGAGGGAGGTACAGCTCCCGGAGGCTCGCGCCTTCTATGGATTTCAGATTG 367710 Query 1456010 CCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA-C 1456068 ||||||||||||||||||| || | ||| || || |||| || ||| |||| || Sbjct 367709 CCATCGAAAACATCCACTCCGAGATGTACAGCCTTCTTCTCGAAACATACATCAAAGATT 367650 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 || || ||||| ||| ||||| | |||||||| || || || | || ||| Sbjct 367649 CCTGT-GAGAAATCCCATCTCTTCCATGCCATCGAGACCGTCCCCTGCGTCGCCCGCAAG 367591 Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA---CACTTTGCCGAGCGGC 1456185 || | ||||| | |||||| || ||||| | || ||||| ||||| Sbjct 367590 GCTCAGTGGGCCCTACGTTGGATCGAC-------GCCTCCAATTCA-TTTGCAGAGCGCA 367539 Query 1456186 TCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244 || | | ||||| |||| ||||| ||||| ||||| || || ||||| |||||||| | Sbjct 367538 TCCTTGCGTTTGCTTGCGTTGAGGGAATCTTCTTCTCCGGTAGCTTCTGTGCCATCTTCT 367479 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||| | || || ||||||||||| Sbjct 367478 GGCTCAAGAAGAGAGGGCTAATGCCCGGTCT 367448 >seq20799 Length=908468 Score = 89.7 bits (98), Expect = 7e-12 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 724907 CTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAA 724966 || ||||| |||||| | |||||||| |||||| || | ||||| ||| |||| || Sbjct 858932 CTATATCTTCAAGGTCTTGAAGCAGGTTCACCCC-GA--CATTGGG--ATC-TCCAGTAA 858985 Query 724967 GTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACC-GCATCGGCACCGAGG 725025 | | ||| || |||||||| || ||||||| || |||| || | ||| ||| Sbjct 858986 GGCGATGAGCATAATGAACTCTTTCATCAACGATATTTTCGAGAAGCTTGCGCAG-GAGT 859044 Query 725026 CCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCG 725085 | ||||| || || | ||||||| || ||| |||| |||||||||||| Sbjct 859045 CTTCCCGCCTAGCTCGGTACAACAAGAAGCCTACTATCACTTCGCGTGAGATCCAGACCT 859104 Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||| || | | | |||||| ||||||| |||||| || |||||||| || Sbjct 859105 CGGTGCGTCTTGTTCTCCCCGGCGAGCTGGCCAAGCACGCGGTTTCCGAGGGTAC 859159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7170779668106124