Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq55201 253 3e-61
seq25504 250 4e-60
seq20799 89.7 7e-12
>seq55201
Length=1221137
Score = 253 bits (280), Expect = 3e-61
Identities = 389/548 (71%), Gaps = 15/548 (3%)
Strand=Plus/Plus
Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793
||||| ||||||| | |||| || |||||||| | || ||| ||||| |||||| |
Sbjct 300847 AACCCCGACCGCTTCTGCATGTTTCCGATCCGCTATCCGCAGATCTGGGAGATGTACAAG 300906
Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853
|||| | ||||| ||||| ||||| || || |||||||||||| ||| | ||
Sbjct 300907 AAAG-CAGAGGCTTCCTTCTGGACTGCGGAAGAGGTCGACCTCTCACAAGACCTGCGTCA 300965
Query 1455854 CTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTT 1455910
||||| | || | | |||||||||||| ||| ||| |||||||||||||| ||
Sbjct 300966 CTGGGATCACACACTTACCTCCGACGAGCGCCACTTCGTCACCCACGTCCTCGCCTTCTT 301025
Query 1455911 TCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCC 1455970
| ||||| ||||| ||||| |||||||| |||||||| || ||| || || |
Sbjct 301026 T-GCCGCTTCAGATGGTATCGTCCTTGAGAACCTAGCCGGCCGATTCATGCGCGAAGTTC 301084
Query 1455971 AATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTG 1456030
|| | || ||||| || || ||||| || ||||||||||| |||||||| ||||| |
Sbjct 301085 AACTCCCGGAGGCTCGCGCATTCTACGGCTTTCAGATCGCCATTGAAAACATTCACTCCG 301144
Query 1456031 AAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT 1456090
||| || || || |||| || ||| |||| ||| | || || || ||| |
Sbjct 301145 AAATGTATAGTCTTCTCCTCGAGACTTACATCAAAGACTCAAAGGAAAAATCCCTCCTTT 301204
Query 1456091 TTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA 1456150
|||| |||||||| || | || | || ||||| | |||||| || ||||
Sbjct 301205 TTCGTGCCATCGAGACCATCCCCTGCGTCGCTCGCAAGGCTCAGTGGGCGCTGCGCTGGA 301264
Query 1456151 TCAACAAGGAGGGCCTC-GACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAG 1456207
| || ||||| || || ||||| |||||| | ||| || || |||| ||
Sbjct 301265 TTGAC-------GCCTCTGATACATTTGCTGAGCGGATTCTCGCTTTCGCTTGCGTTGAA 301317
Query 1456208 GGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATG 1456267
|| || || ||||| ||||| |||||||||||||| ||||||||||||||||| | |||
Sbjct 301318 GGTATTTTCTTCTCTGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATG 301377
Query 1456268 CCCGGTCT 1456275
||||||||
Sbjct 301378 CCCGGTCT 301385
>seq25504
Length=639989
Score = 250 bits (276), Expect = 4e-60
Identities = 408/571 (71%), Gaps = 25/571 (4%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCT-GCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGC 1455773
|||||||| || || | | | ||||| |||||| ||| |||| || || ||||| | |
Sbjct 368004 GAGCCGCTTCTTGCCCCAAACCCCGA-CCGCTTCTGTA-TGTTTCCGATACGCTATCCTC 367947
Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833
||| ||||| |||||| | |||| |||| |||||||| ||||| || ||||| ||||||
Sbjct 367946 AGATCTGGGAGATGTACAAGAAAG-CCGAAGCCTCCTTCTGGACAGCAGAGGAAGTCGAC 367888
Query 1455834 CTCGGCGCCGACA-CGGTCCACTGGGTG---TCGCTGAGCGACGACGAGCGCCATTTCAT 1455889
||| | ||| | ||| |||||| || || | | ||||||||||| ||| |
Sbjct 367887 CTCTCCCAAGACCTCCGTC-ACTGGGATCAATCCCTCACCTCTGACGAGCGCCACTTCGT 367829
Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949
|| ||||| |||||||| ||| || || ||||| ||||| ||||||||| ||||
Sbjct 367828 CACCCACGTTCTCGCCTTCTTT-GCTGCATCTGATGGAATCGTCCTCGAGAACCTTGCCG 367770
Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009
||||||| |||| ||||| || | || ||||| || || || || || ||||| |
Sbjct 367769 GCCGCTTCATGAGGGAGGTACAGCTCCCGGAGGCTCGCGCCTTCTATGGATTTCAGATTG 367710
Query 1456010 CCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA-C 1456068
||||||||||||||||||| || | ||| || || |||| || ||| |||| ||
Sbjct 367709 CCATCGAAAACATCCACTCCGAGATGTACAGCCTTCTTCTCGAAACATACATCAAAGATT 367650
Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128
|| || ||||| ||| ||||| | |||||||| || || || | || |||
Sbjct 367649 CCTGT-GAGAAATCCCATCTCTTCCATGCCATCGAGACCGTCCCCTGCGTCGCCCGCAAG 367591
Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA---CACTTTGCCGAGCGGC 1456185
|| | ||||| | |||||| || ||||| | || ||||| |||||
Sbjct 367590 GCTCAGTGGGCCCTACGTTGGATCGAC-------GCCTCCAATTCA-TTTGCAGAGCGCA 367539
Query 1456186 TCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244
|| | | ||||| |||| ||||| ||||| ||||| || || ||||| |||||||| |
Sbjct 367538 TCCTTGCGTTTGCTTGCGTTGAGGGAATCTTCTTCTCCGGTAGCTTCTGTGCCATCTTCT 367479
Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||||||||| | || || |||||||||||
Sbjct 367478 GGCTCAAGAAGAGAGGGCTAATGCCCGGTCT 367448
>seq20799
Length=908468
Score = 89.7 bits (98), Expect = 7e-12
Identities = 165/235 (70%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 724907 CTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAA 724966
|| ||||| |||||| | |||||||| |||||| || | ||||| ||| |||| ||
Sbjct 858932 CTATATCTTCAAGGTCTTGAAGCAGGTTCACCCC-GA--CATTGGG--ATC-TCCAGTAA 858985
Query 724967 GTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACC-GCATCGGCACCGAGG 725025
| | ||| || |||||||| || ||||||| || |||| || | ||| |||
Sbjct 858986 GGCGATGAGCATAATGAACTCTTTCATCAACGATATTTTCGAGAAGCTTGCGCAG-GAGT 859044
Query 725026 CCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCG 725085
| ||||| || || | ||||||| || ||| |||| ||||||||||||
Sbjct 859045 CTTCCCGCCTAGCTCGGTACAACAAGAAGCCTACTATCACTTCGCGTGAGATCCAGACCT 859104
Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
| ||||| || | | | |||||| ||||||| |||||| || |||||||| ||
Sbjct 859105 CGGTGCGTCTTGTTCTCCCCGGCGAGCTGGCCAAGCACGCGGTTTCCGAGGGTAC 859159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7170779668106124
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |