Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq41242 122 9e-23 seq40947 104 2e-17 seq38797 104 2e-17 seq14985 82.4 8e-11 >seq41242 Length=195047 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || || | ||| ||||| || || |||||||| || |||||||||||| || Sbjct 172073 CCTCCCCTAAGACGAAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGCA 172132 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || | ||| || || ||||| |||| | ||||||||| || || Sbjct 172133 AGGGTGCGGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGG 172192 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||| || || | |||||||| ||||| Sbjct 172193 ATGCCCTCCTTATCCTGGATCTTAGCTTTCACATTATCGATGGTGTCGGAGCTCTCCACT 172252 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | ||||| || || || ||||| Sbjct 172253 TCAAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATCTGCAT 172299 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || || | ||| ||||| || || || |||||||| ||||||||||| || Sbjct 171845 CCTCCCCTAAGGCGGAGCACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCA 171904 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || ||||| | |||||| || || || Sbjct 171905 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCCGGGGGA 171964 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | ||||||||| ||||| Sbjct 171965 ATGCCCTCCTTATCCTGGATCTTAGCCTTCACGTTATCGATTGTGTCGGAGCTCTCCACC 172024 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || |||||||| ||||| Sbjct 172025 TCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 172071 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || |||||||||||||| |||||||| || Sbjct 146669 CCACCACGGAGACGGAGGACAAGGTGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCA 146728 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || |||||||| || ||||| || | | ||||||||| || || Sbjct 146729 AGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGA 146788 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || ||| || || || | ||| ||||| ||||| Sbjct 146789 ATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTATCAATTGTATCGGAGCTCTCCACT 146848 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| ||||| || || || | ||| || || ||||| ||||| Sbjct 146849 TCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTCACAAAAATCTGCAT 146895 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || |||||||||||||| |||||||| || Sbjct 151833 CCACCACGGAGACGGAGGACAAGGTGGAGGGTAGATTCCTTTTGAATATTGTAGTCTGCA 151892 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || |||||||| || ||||| || | | ||||||||| || || Sbjct 151893 AGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGA 151952 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || ||| || || || | ||| ||||| ||||| Sbjct 151953 ATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTATCAATTGTATCGGAGCTCTCCACT 152012 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| ||||| || || || | ||| || || ||||| ||||| Sbjct 152013 TCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTCACAAAAATCTGCAT 152059 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || ||||||||||||||||||||||| | | ||| | ||| || Sbjct 171179 ACTAGGTGAAGGGTCGATTCCTTTTGAATGTTGTAGTCTGCCAGGGTACGGCCGTCCTCC 171238 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| ||||| | ||||| ||||| || ||||| || || || || Sbjct 171239 AGCTGCTTGCCGGCAAATATCAACCTTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 171298 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 ||||| || || ||| | || || || ||||| || || || |||||||| Sbjct 171299 ATTTTGGCCTTCACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATGGTTTTT 171358 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || || || || ||||| Sbjct 171359 CCAGTGAGGGTCTTGACAAAGATCTGCAT 171387 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || || || || |||||||||||||| | | |||| | Sbjct 146906 AGACGGAGCACCAGGTGAAGGGTTGACTCTTTCTGAATGTTGTAGTCCGCGAGGGTGCGG 146965 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| ||||| |||| | |||||| || || || ||||| || Sbjct 146966 CCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCC 147025 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || ||||| || || || | |||||||| || || || || || Sbjct 147026 TTATCCTGTATTTTAGCCTTCACGTTATCAATCGTGTCGGAACTCTCAACCTCAAGGGTG 147085 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | || ||||| || || ||||| Sbjct 147086 ATGGTCTTGCCGGTAAGGGTCTTAACAAAGATCTGCAT 147123 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || || || || |||||||||||||| | | |||| | Sbjct 152070 AGACGGAGCACCAGGTGAAGGGTTGACTCTTTCTGAATGTTGTAGTCCGCGAGGGTGCGG 152129 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| ||||| |||| | |||||| || || || ||||| || Sbjct 152130 CCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCC 152189 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || ||||| || || || | |||||||| || || || || || Sbjct 152190 TTATCCTGTATTTTAGCCTTCACGTTATCAATCGTGTCGGAACTCTCAACCTCAAGGGTG 152249 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | || ||||| || || ||||| Sbjct 152250 ATGGTCTTGCCGGTAAGGGTCTTAACAAAGATCTGCAT 152287 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | ||| || || || |||||||||||||||||||| ||||| || Sbjct 171389 CCACCCCTAAGACGAAGCACAAGATGGAGGGTGGATTCCTTTTGAATGTTATAGTCAGCA 171448 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || |||||||| ||||| ||||| || | | ||||| || || || Sbjct 171449 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCTTTGCTGGTCCGGGGGG 171508 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || ||| | ||||| || ||||| Sbjct 171509 ATGCCCTCCTTGTCCTGTATCTTAGCCTTTACATTGTCGATGGTGTCCGAGCTCTCCACC 171568 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || | || || || || || ||||| Sbjct 171569 TCAAGGGTGATTGTCTTTCCAGTGAGGGTCTTGACAAATATCTGCAT 171615 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || || || || ||||||||||| ||||| ||||| || || Sbjct 170933 CCACCACGGAGACGGAGTACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAATCTGCA 170992 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || |||||||| || || || || | | ||||||||| ||||| Sbjct 170993 AGGGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAGATTAGCCTCTGCTGATCTGGCGGG 171052 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || ||| ||||| || | ||||| || || || Sbjct 171053 ATCCCCTCCTTGTCCTGGATCTTTGCCTTGACATTATCGATGGTGTCCGAGCTCTCTACT 171112 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| || || || | || || || || |||||||| Sbjct 171113 TCTAAGGTGATGGTCTTTCCAGTAAGCGTCTTCACAAATATTTGCAT 171159 >seq40947 Length=4604 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| ||||| || | || ||||| || ||||||||||| || |||||||| ||| | Sbjct 1451 CCTCCCCTGAGACGGAGAACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGCG 1392 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || || || ||||| |||| | |||||| || || || Sbjct 1391 AGGGTGCGGCCGTCCTCAAGTTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGG 1332 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || ||||| || || || | ||||| || || ||| Sbjct 1331 ATGCCCTCCTTGTCCTGGATTTTGGACTTAACGTTCTCGATGGTGTCCGAACTCTCTACG 1272 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || || || || | ||| || | ||| || ||||| Sbjct 1271 TCAAGGGTAATAGTCTTCCCTGTGAGAGTCTTGATGAAGATCTGCAT 1225 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||||||||||| || || ||||| || |||||||||||| Sbjct 1223 CCTCCCCGAAGACGAAGAACGAGGTGTAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 1164 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || |||||||| || || || |||| | |||||| || || || Sbjct 1163 AGGGTTCGGCCGTCCTCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGG 1104 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || ||||| || || || | |||||||| ||||| Sbjct 1103 ATTCCCTCCTTGTCCTGGATTTTGGTCTTAACGTTCTCGATCGTGTCGGAACTCTCCACC 1044 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || ||||| | || |||||||| || ||||| Sbjct 1043 TCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTAACGAATATCTGCAT 997 >seq38797 Length=1288649 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || || | || || || || ||||| ||||| || |||||||| || || Sbjct 628761 CCTCCCCTCAGACGGAGAACTAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 628702 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| ||||| |||| | |||||||| || || Sbjct 628701 AGGGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGG 628642 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || ||| | || || || ||||| Sbjct 628641 ATGCCCTCCTTGTCCTGGATCTTGGCCTTTACGTTGTCAATAGTATCCGAACTCTCCACC 628582 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || ||||| | ||| || ||||| || ||||| Sbjct 628581 TCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 628535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || || | || | ||| || || || |||||||||||||||||||| | Sbjct 629217 CCTCCCCTCAGACGGAGGACTAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCCGCC 629158 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | ||| || || || || Sbjct 629157 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAATATCAGCCTCTGTTGGTCCGGGGGG 629098 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || || || ||| | ||||| || || || Sbjct 629097 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGAGCTCTCAACC 629038 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || ||||| || ||||||| ||| || ||||| || ||||| Sbjct 629037 TCTAAGGTGATGGTCTTGCCGGTTAGAGTCTTCACGAAGATCTGCAT 628991 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||| || || || |||||||||||| | | |||| | ||| || Sbjct 629427 ACAAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAGGTGCGTCCGTCCTCA 629368 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || ||||| ||||| || | | ||| || || || || ||||| || || || || Sbjct 629367 AGTTGCTTGCCCGCAAAGATAAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTATCCTGG 629308 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | |||||||| ||| || || || || ||||| || Sbjct 629307 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTCTTT 629248 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || ||||| || ||||| Sbjct 629247 CCAGTGAGCGTCTTCACGAAGATCTGCAT 629219 >seq14985 Length=335608 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| || | ||| || || || || || || ||||| ||||||||||| || Sbjct 170121 TTCCGCCTCTAAGCCTCAAAACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCCG 170180 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | ||| || || || | ||| || || ||||||||||| || || ||||| || | Sbjct 170181 CTAAGGTCCGACCATCTTCCAACTGCTTCCCGGCAAAAATCAATCGTTGTTGATCAGGTG 170240 Query 134605 GTATGCCTTCTTTTTCTTGA 134624 | ||||| || || || ||| Sbjct 170241 GAATGCCCTCCTTGTCCTGA 170260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504937843073040