Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq40021 109 8e-19 seq2987 102 1e-16 >seq40021 Length=871558 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| |||||||| || || |||||||| || ||||| ||||| | || | ||||| Sbjct 117916 AGTGCCCGCATTGAACAAGGTAGGAGAAGCATGAGTAAACCACCGTAGTGACATCAGATG 117857 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || |||| || || || || ||||| | |||||| ||||| || || | ||||| Sbjct 117856 ATAAGTTTTGATGGCAGAATCAATATCTTCTTTATGAATCCCTATAGCAACTCTCATCAG 117797 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||||||||| || | ||| ||| ||| | || ||| | || || || | || || Sbjct 117796 CATATGCTGGGGCCTTTCCACCACTTTCCCAGATAATTTTAGAAGATAGGACCTCTCGAG 117737 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||||||| ||||| || | || ||||||||| || ||||| || Sbjct 117736 AGTTTTAAAGCCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 117689 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | |||| | || | ||||| |||| || || Sbjct 118230 TCCTCCTTGATCAACATAGCGAGCAGTATCATTAAAAACCCGTAGCATTGGAACTATGCC 118171 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || ||||||||| ||| ||| ||||| || | || ||||| || || || Sbjct 118170 ATTTGAAACACCATTTGTCCCACGAATGTAACTCCCAGTGGCACGAATGTTGTGGATGGA 118111 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | || ||||| || || ||| |||| |||||| ||| || || |||||||| Sbjct 118110 GACGCCAATTCCACCAGCAGATTTGCTTATTATAGCACACTCTTTTAAGGTATCATATAT 118051 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||||||| ||||| || || || ||||| Sbjct 118050 TCCCTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCT 118009 >seq2987 Length=13944 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | |||| | |||| || ||| |||| ||||||| Sbjct 1682 CCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACCA 1741 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| || |||||||| | || |||||||| || || Sbjct 1742 TTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGAC 1801 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || || || | ||||| || || || ||||| || Sbjct 1802 ACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAAAGTATCATAAATC 1861 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || |||||||||||| ||||| Sbjct 1862 CCATCAATGCTATCATCTTTCATG 1885 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || |||||||||||| |||| |||| ||| || ||||| || || | ||||||||| Sbjct 530 AAATCATCTCCCCAACAATCAGCCAAACCAAGAGCCTCATTAGGGCAAAATAATGACCAC 589 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | |||| | || || | || ||| || ||||| ||||||||||| || ||| ||| Sbjct 590 TCTTCATTACTCTGGACCCTTTCCATGAAAAGATCAGGAATCCAAAGGGCATAAAAAAGA 649 Query 69640 TCTCTGGTTCTAT 69652 ||||||| |||| Sbjct 650 TCTCTGGCCCTAT 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686282837183280