Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq55201 123 2e-23 >seq55201 Length=1221137 Score = 123 bits (136), Expect = 2e-23 Identities = 262/383 (68%), Gaps = 10/383 (3%) Strand=Plus/Plus Query 43909 TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 ||||| ||||||||| | || || || || || || || ||||| || ||||| || Sbjct 301073 TGCGC--GAAGTTCAACTCCCGGAGGCTCGCGCATTCTACGGCTTTCAGATCGCCATTGA 301130 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 ||| ||||| || |||||||| |||||||| | || || ||||||||||| | || Sbjct 301131 AAACATTCACTCCGAAATGTATAGTCTTCTCCTCGAGACTTACATCAAAGACTCAAAGGA 301190 Query 44029 GAAGCATCGAT--TGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGA 44085 || ||| | | ||| ||| || || || | || |||| | | || || | Sbjct 301191 AAA--ATCCCTCCTTTTTCGTGCCATCGAGACCATCCCCTGCG-TCGCTCGCAAGGCTCA 301247 Query 44086 CTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGC 44145 ||||| || ||||| | | |||| | |||| || || || |||| || || Sbjct 301248 GTGGGCGCTGCGCTGGATTGACGCCTCTGATACATTTGCTGAGCGGATTCTCGCTTTCGC 301307 Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAAC 44204 || ||||| |||||||| || || | | | |||| |||| || ||| | ||||| | Sbjct 301308 TTGCGTTGAAGGTATTTTCTTCTCTGGCAGCTTCTGCG-CCATCTTCTGGCTCAAGAAGC 301366 Query 44205 GAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264 | ||||||||||| || | || || || || ||| | ||| ||||||||| || | | Sbjct 301367 GCGGTTTGATGCCCGGTCTCACATTCTCCAACGAGCTGATATCTCGTGATGAGGGTCTCC 301426 Query 44265 ATTGCGATTTTGCTTGCTTGTTA 44287 ||||||| ||||| ||| | ||| Sbjct 301427 ATTGCGACTTTGCCTGCCTTTTA 301449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397102863076510