Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq19607 91.5 1e-13
seq41242 87.8 2e-12
seq38797 84.2 2e-11
>seq19607
Length=286188
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109
||| || || || || |||||||| ||| | | | || |||| || ||||| || ||
Sbjct 225708 CGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCC 225649
Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169
|||| | || | ||||||||||||||||| | ||||| ||||| |||||| ||
Sbjct 225648 GGCGAAGATTAAGCGCTGTTGATCCGGCGGAATGCCCTCCTTATCCTGGATCTTTGCCTT 225589
Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
| | | || | || || | || || || || || || || | || ||||| |||||
Sbjct 225588 AACGTTATCGATTGTATCAGAGGACTCCACCTCGAGGGTGATCGTCTTCCCCGTTAGAGT 225529
Query 27230 TTTCACAAAGATTTGCAT 27247
||| || ||||| |||||
Sbjct 225528 TTTGACGAAGATCTGCAT 225511
>seq41242
Length=195047
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || ||||||||||||||||| | |||| | || || |||||||| ||
Sbjct 146699 GTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCA 146758
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || || | ||| ||||| || || | |||||||| || |||||| |||
Sbjct 146759 GCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTC 146818
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | || || | | || ||||| | ||| || | || ||||| |||||
Sbjct 146819 ACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTC 146878
Query 27231 TTCACAAAGATTTGCATA 27248
|||||||| || ||||||
Sbjct 146879 TTCACAAAAATCTGCATA 146896
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || ||||||||||||||||| | |||| | || || |||||||| ||
Sbjct 151863 GTAGATTCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCA 151922
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | || || | ||| ||||| || || | |||||||| || |||||| |||
Sbjct 151923 GCAAAGATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTC 151982
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | || || | | || ||||| | ||| || | || ||||| |||||
Sbjct 151983 ACGTTATCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTC 152042
Query 27231 TTCACAAAGATTTGCATA 27248
|||||||| || ||||||
Sbjct 152043 TTCACAAAAATCTGCATA 152060
>seq38797
Length=1288649
Score = 84.2 bits (92), Expect = 2e-11
Identities = 140/200 (70%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTAC 27108
||| || ||||| ||||| || ||||| | || | |||| |||| || ||||||||||
Sbjct 629644 CGTGGACTCTTTCTGAATGTTATAGTC-CGCAAGAGTGCGGCCGTCCTCAAGCTGTTTAC 629586
Query 27109 CGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTT 27168
|||| | || || | || || ||||| || | ||||| || || |||||| |
Sbjct 629585 CGGCAAAGATAAGCCTTTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTTGCCT 629526
Query 27169 TCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAG 27228
| | | | || | ||||| | | || || || || || |||| ||| || || || |
Sbjct 629525 TTACGTTGTCAATTGTGTCCGAGCTCTCCACCTCCAGGGTGATAGTTTTTCCAGTGAGGG 629466
Query 27229 TTTTCACAAAGATTTGCATA 27248
| |||||||| |||||||||
Sbjct 629465 TCTTCACAAATATTTGCATA 629446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424556848707024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |