Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq58380 136 5e-27 seq44097 96.9 4e-15 seq25504 96.9 4e-15 seq55201 84.2 3e-11 >seq58380 Length=580937 Score = 136 bits (150), Expect = 5e-27 Identities = 279/412 (68%), Gaps = 2/412 (0%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 ||| || || || | || ||||| || |||| ||| | || ||||| | ||||| Sbjct 483202 ATCTAGAATGTCTGCACGGTTAGTAGCTGCAAGAACTATGATACCAGTATTTCCTTCAAA 483143 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 ||||||||||| || | | ||||| | ||||||||||| |||||||| || Sbjct 483142 ACCATCCATCTCAGTTAAAAGCTGATTCAGAGTTTGTTCTCTTTCATCATTCCCTCCTCC 483083 Query 11602 ACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG 11661 | ||| | | || ||| | || || |||||||| ||||||| || |||||||| || Sbjct 483082 AATACCTGTTCCTCGCTGCCTTCCAACAGCATCAATTTCATCAACAAACACAATACAAGG 483023 Query 11662 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAA 11721 | |||||| || | | || ||||| ||||| | | |||||| || |||||||| Sbjct 483022 TGCATTTTCTTTAGCCTTCTTGAAAAGATCTCGAACTCGTGAGGCACCAACGCCAACAAA 482963 Query 11722 CATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGA 11780 |||||||||||| | | | ||| | || || || || || | |||||| || | Sbjct 482962 CATCTCCACAAACTCAGATCCTGAG-ATTGAGAAAAAGGGAACGCCAGCTTCACCAGCAA 482904 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGG 11840 | || ||| || || |||||||| ||||| || ||| |||||| | ||| | Sbjct 482903 TCGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGGAGGACCAATGAGAAGAACACCTTTAG 482844 Query 11841 GGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 | || |||||| | || | | || || |||| ||| ||||| ||||| Sbjct 482843 GTATACGAGCACCAATAGCAGTAAACCTTTCTGGTTTCTTCAGAAACTCCAC 482792 >seq44097 Length=433404 Score = 96.9 bits (106), Expect = 4e-15 Identities = 218/322 (68%), Gaps = 12/322 (4%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || || |||||||| ||||| | Sbjct 154965 AAACCCATCCATCTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCGTCATTCCC--- 155021 Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 |||| ||||| | | ||| | || || ||||||||||||||||| || ||||| Sbjct 155022 ACCACCAAGCCCAGCCCCTCTCTGCCTTCCAACTGCATCAATCTCATCAATAAAAACAAT 155081 Query 11656 ACATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 ||| || |||||| || | ||||| | ||| | ||||| || || || Sbjct 155082 ACAAGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCCTCACCCTCGAAGCTCCAACT 155139 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 |||||||| | |||||||| | || |||| ||| | ||| || ||| | || Sbjct 155140 CCAACAAAAAGTTCCACAAACTCTGAAGCAGCACACGAAAAGAACGGCACACCGGCCTCG 155199 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCG-CGAGAAGGGC 11832 || || | |||| ||| || || ||||| || || || || | |||| | | |||| Sbjct 155200 CCGGCAACCGCTCTGGCTAGCAGTGTCTTCCCGGTTCCCGG-TGGCCCGACCAAAAGGCA 155258 Query 11833 GCCTCGGGGGATCTTGGCACCA 11854 ||| ||| ||||| |||||| Sbjct 155259 ACCTTTGGGAATCTTAGCACCA 155280 >seq25504 Length=639989 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| || || || || || || || |||||| ||||| Sbjct 367394 GCAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGACCG 367453 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || | |||||| | ||| | || || ||||| |||||||||||||| Sbjct 367454 GGCATTAGCCCTCTCTTCTTGAGCCAGAAGATGGCACAGAAGCTACCGGAGAAGAAGATT 367513 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||||| || || |||||||||| | ||| || || || || Sbjct 367514 CCCTCAACGCAAGCAAACGCAAGGATGCGCTCTGCAAATGA 367554 >seq55201 Length=1221137 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || |||||||||||||| || || || || || || ||||| ||||| Sbjct 301440 GGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGACC 301381 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | ||| |||||||| | ||| | || |||||||| || |||||||| || Sbjct 301380 GGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAAAT 301321 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 ||| || || || || || || | || || || || || Sbjct 301320 ACCTTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAA 301282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627459690139200