Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq25504 129 7e-25 seq58380 113 6e-20 seq55201 107 2e-18 >seq25504 Length=639989 Score = 129 bits (142), Expect = 7e-25 Identities = 192/272 (71%), Gaps = 3/272 (1%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| |||||||||||||| || ||||| || || |||||| ||||| Sbjct 367394 GCAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGACCG 367453 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| || || | |||||| | |||||| || ||||| || || ||||||||||| Sbjct 367454 GGCATTAGCCCTCTCTTCTTGAGCCAGAAGATGGCACAGAAGCTACCGGAGAAGAAGATT 367513 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAAC 130195 ||||| || || || ||||||| || ||||| ||||| || ||| | || | | Sbjct 367514 CCCTCAACGCAAGCAAACGCAAGGATGCGCTCTGCAAATGAATTGGA---GGCGTCGATC 367570 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 130255 || | |||||||| ||||| ||| || |||||||||| ||| || | ||| Sbjct 367571 CAACGTAGGGCCCACTGAGCCTTGCGGGCGACGCAGGGGACGGTCTCGATGGCATGGAAG 367630 Query 130256 AGTTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 || | || || | | |||||||||||| Sbjct 367631 AGATGGGATTTCTCACAGGAATCTTTGATGTA 367662 >seq58380 Length=580937 Score = 113 bits (124), Expect = 6e-20 Identities = 196/280 (70%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| |||||||||||||| || || ||||| | |||||||| | |||||||||| | Sbjct 483147 TCAAAACCATCCATCTCAGTTAAAAGCTGATTCAGAGTTTGTTCTCTTTCATCATTCCCT 483088 Query 14210 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | ||| | | || ||| | || || || ||||||||||| | || || ||| Sbjct 483087 CCTCCAATACCTGTTCCTCGCTGCCTTCCAACAGCATCAATTTCATCAACAAACACAATA 483028 Query 14270 CATGGTTGATTTTC-ACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || ||| |||||| | | ||| ||| | |||||| |||| |||||| || || Sbjct 483027 CAAGGTGCATTTTCTTTAGCCTTCTTGAAA-AGATCTCGAACTCGTGAGGCACCAACGCC 482969 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCAC 14387 ||||||||||||||||| | | | | | |||| || ||||| ||| || ||||| Sbjct 482968 AACAAACATCTCCACAAACTCAGATCCTG-AGATTGAGAAAAAGGGAACGCCAGCTTCAC 482910 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | || || || ||| || || ||||| || || || || Sbjct 482909 CAGCAATCGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGG 482870 >seq55201 Length=1221137 Score = 107 bits (118), Expect = 2e-18 Identities = 349/531 (66%), Gaps = 21/531 (4%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCC 129784 ||| ||||| |||| |||||| ||||| || ||||| || | ||| |||||| |||| Sbjct 301728 ATATTCCCCGACCCTCTTCTCAAAGAAATTCGTCTTACCCTG-AAG-TGATATGAGCTCC 301671 Query 129785 ATAAAATCAAATGGGTTCTTTGAGT-----TCCAAATTGCTGGCACTCCAATCTGTTTGA 129839 || | |||||||| || ||| | ||| |||| || | | || | || Sbjct 301670 ATCCAGTCAAATGGATT---TGATACACCATACAACTTGCCATAACCCAGAGCTCCTAGA 301614 Query 129840 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGA 129899 || ||||| | ||| ||||||| || ||| |||| |||||| || | | Sbjct 301613 --AGCCGATCAGCGACAAACTCAATATAGCGGCTCATTAGATCGGCGTTCATTCCCACAA 301556 Query 129900 GGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGA 129959 | ||||| || || || | | ||| || ||||||| |||||||| ||| || | Sbjct 301555 GAGCGCATGGAAGTGCATCGCAAACAAACTCCCTCTCAATATCCACAGCATCCGCAACAA 301496 Query 129960 TGGCGTGAATGGTCTCCG-TGCCAGGTCTATTGCGCA-AAGTCTTGAAGAGTTCCACGGC 130017 | | ||| ||||| || | | | ||| || ||| || | | || ||| Sbjct 301495 TCTCTCGAACCCTCTCCTCTGAAATCT-TGTTGATCAGAAGACTATATAAAAGGCA-GGC 301438 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| || ||||||||||| ||||| || || || || || ||||| ||||| || Sbjct 301437 AAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGACCGGG 301378 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| | ||| |||||||| | |||||| || || || || |||||||||||| || || Sbjct 301377 CATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCAGAGAAGAAAATACC 301318 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 || || || ||||| || | | ||||||||||| | || | |||| ||| Sbjct 301317 TTCAACGCAAGCGAAAGCGAGAATCCGCTCAGCAAATGTATCAGA---GGCGTCAATCCA 301261 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 || ||||||||| ||||| ||| || |||| ||||| ||| || Sbjct 301260 GCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGC 301210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617871635463120