Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq55201 149 7e-31 seq25504 149 7e-31 seq58380 141 1e-28 seq44097 91.5 2e-13 >seq55201 Length=1221137 Score = 149 bits (164), Expect = 7e-31 Identities = 312/456 (68%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||||||||||| | |||| || || || ||||| ||||| ||||||||||| |||| Sbjct 301282 TTTGCTGAGCGGATTCTCGCTTTCGCTTGCGTTGAAGGTATTTTCTTCTCTGGCAGCTTC 301341 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| || | |||||||||||||| ||| | ||||| |||||| |||||||||||| Sbjct 301342 TGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCCGGTCTCACATTCTCCAACGAG 301401 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTAT-T 94976 || || |||||||| ||||| ||||| || ||||| || | ||| | || | | Sbjct 301402 CTGATATCTCGTGATGAGGGTCTCCATTGCGACTTTGC-CTG---CCTTTTATATAGTCT 301457 Query 94977 GCGTATTAAACCAACGACT------GAGACTATTCATTCTATTGTTAAGGAAGCCGTTGA 95030 | || || ||| || | |||| ||| |||||| ||| || || || Sbjct 301458 TCTGATCAA--CAA-GATTTCAGAGGAGAGGGTTCGAGAGATTGTTGCGGATGCTGTGGA 301514 Query 95031 GATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGA 95090 ||||||| | || | | ||||| |||||||||||||| | || ||||| | || Sbjct 301515 TATTGAGAGGGAGTTTGTTTGCGATGCACTTCCATGCGCTCTTGTGGGAATGAACGCCGA 301574 Query 95091 AAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCC 95150 |||| |||||||||| ||| ||||| | || || || || |||| Sbjct 301575 TCTAATGAGCCGCTATATTGAGTTTGTCGCTGATCG--GCTTCTAGGAGCTCTGGGTTAT 301632 Query 95151 TCCAATTTGGA-ACTCCA-AGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGG 95208 ||| ||| | | | ||||||||||||| |||||| ||| || | || Sbjct 301633 GGCAAGTTGTATGGTGTATCAAATCCATTTGACTGGATGGAGCTCATATCACTTCAGGGT 301692 Query 95209 AAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 95244 ||||| || ||||| || |||||||| ||||| ||| Sbjct 301693 AAGACGAATTTCTTTGAGAAGAGGGTCGGGGAATAT 301728 >seq25504 Length=639989 Score = 149 bits (164), Expect = 7e-31 Identities = 130/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 ||| ||||| ||||| || | || ||||| || |||||||| ||||||||||| ||| Sbjct 367555 TTCATTTGCAGAGCGCATCCTTGCGTTTGCTTGCGTTGAGGGAATCTTCTTCTCCGGTAG 367496 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 |||||| || || | |||||||||||| |||| || ||||| |||||| ||||||||| Sbjct 367495 CTTCTGTGCCATCTTCTGGCTCAAGAAGAGAGGGCTAATGCCCGGTCTCACCTTCTCCAA 367436 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||| || |||||||||||||| || ||| || ||||| Sbjct 367435 CGAGCTCATATCTCGTGACGAGGGTCTGCACTGTGACTTTGC 367394 >seq58380 Length=580937 Score = 141 bits (156), Expect = 1e-28 Identities = 253/364 (70%), Gaps = 4/364 (1%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 ||||||||||||||||| || ||||| || || | ||||||||| | |||||||||| || Sbjct 483147 TCAAAACCATCCATCTCAGTTAAAAGCTGATTCAGAGTTTGTTCTCTTTCATCATTCCCT 483088 Query 9671 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | ||| | | || ||| |||| || |||||||| ||||||| || || || Sbjct 483087 CCTCCAATACCTGTTCCTCGCTGCCTTCCAACAGCATCAATTTCATCAACAAACACAATA 483028 Query 9731 CATGGTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 || ||| |||||| ||| ||| ||| ||||| || || || ||| || || || Sbjct 483027 CAAGGTGCATTTTCTTTAGCCTTCTTGAAA-AGATCTCGAACTCGTGAGGCACCAACGCC 482969 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9848 |||||||||||||||||| | | | | | |||| || ||||| || || ||||| Sbjct 482968 AACAAACATCTCCACAAACTCAGATCCTG-AGATTGAGAAAAAGGGAACGCCAGCTTCAC 482910 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | ||||| || ||| || |||||||| || ||||| || ||| ||| || ||| Sbjct 482909 CAGCAATCGCCTTGGCAAGTAGAGTCTTTCCAGTACCAGGAGGACCAATGAGAAGAACAC 482850 Query 9909 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 || || || || ||| | || | || || |||| ||| ||||| ||||| | Sbjct 482849 CTTTAGGTATACGAGCACCAATAGCAGTAAACCTTTCTGGTTTCTTCAGAAACTCCACCA 482790 Query 9969 TTTC 9972 ||| Sbjct 482789 CTTC 482786 >seq44097 Length=433404 Score = 91.5 bits (100), Expect = 2e-13 Identities = 217/322 (67%), Gaps = 12/322 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| || || |||||||| || || | || |||||| | Sbjct 154965 AAACCCATCCATCTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTCTCGTCATTCCC--- 155021 Query 9673 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 |||| ||||| | | ||| |||| || ||||||||||||||||| || || || Sbjct 155022 ACCACCAAGCCCAGCCCCTCTCTGCCTTCCAACTGCATCAATCTCATCAATAAAAACAAT 155081 Query 9730 GCATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 || || |||||| | || ||||| | ||||| || | | || || || Sbjct 155082 ACAAGG--AGCTTTCGCCTTTGCCTTCTCAAACAAATCCCTCACCCTCGAAGCTCCAACT 155139 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 |||||||| | |||||||| | || || | ||| | ||| || ||| | || Sbjct 155140 CCAACAAAAAGTTCCACAAACTCTGAAGCAGCACACGAAAAGAACGGCACACCGGCCTCG 155199 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCG-CGAGGAGGGC 9906 || |||| |||| ||| || || ||||| || || || || | |||| | | ||| Sbjct 155200 CCGGCAACCGCTCTGGCTAGCAGTGTCTTCCCGGTTCCCGG-TGGCCCGACCAAAAGGCA 155258 Query 9907 ACCTCGTGGAATCTTGGCGCCA 9928 |||| |||||||| || ||| Sbjct 155259 ACCTTTGGGAATCTTAGCACCA 155280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582729289014480