Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq25504 150 2e-31 seq55201 129 6e-25 >seq25504 Length=639989 Score = 150 bits (166), Expect = 2e-31 Identities = 565/871 (65%), Gaps = 25/871 (3%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 ||||| ||||| || || | | |||| |||| |||||||| | || |||||| Sbjct 367965 TTTCCGATACGCTATCCTCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGG 367906 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGA-CAAGC--TCAATTAC 59678 | | ||||| | |||||| || |||||| | ||||| ||| | ||| | Sbjct 367905 ACAGCAGAGGAAGTCGACCTCTCCCAAGACCTCCGTCACTGGGATCAATCCCTCACCTCT 367846 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || ||| ||| || || |||||||| || || ||||||||| || Sbjct 367845 GACGAGCGCCACTTCGTCACCCACGTTCTCGCCTTCTTTGCTGCATCTGATGGAATCGTC 367786 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | || || | | | ||| | ||| || ||| | | ||||| || | ||| Sbjct 367785 CTCGAGAACCTTGCCGGCCGCTTCATGAGGGAGGTACAGCTCCCGGAGGCTCGCGCCTTC 367726 Query 59799 TACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858 || | | |||| || ||| ||||||||||||| |||| || | |||| Sbjct 367725 TATGGATTTCAGATTGCCATCGAAAACATCCACTCCGAGATGTACAGCCTTCTTCTCGAA 367666 Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCC 59917 | | |||| ||| | ||||| | ||| |||| |||||| ||||| |||||| Sbjct 367665 ACATACATCAAAGATTCCTGTGAGAAATCCCATCTCTTCCATGCCATCGAGACCGTCCCC 367606 Query 59918 CGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTG 59976 || || | || || | |||||| | | ||||| || ||| | ||||||| Sbjct 367605 TGC-GTCGCCCGCAAGGCTCAGTGGGCCCTACGTTGGATCGACGCCTCCAAT-TCATTTG 367548 Query 59977 CACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG 60036 || | || || | || ||||| ||||| || |||||||||||||| || ||||||| Sbjct 367547 CAGAGCGCATCCTTGCGTTTGCTTGCGTTGAGGGAATCTTCTTCTCCGGTAGCTTCTGTG 367488 Query 60037 CTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGA 60096 | || ||||||||||| ||| | || || ||||| || || | |||||||||||||| | Sbjct 367487 CCATCTTCTGGCTCAAGAAGAGAGGGCTAATGCCCGGTCTCACCTTCTCCAACGAGCTCA 367428 Query 60097 TTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTATTGG 60156 | || || |||||||| || || || ||||| | | ||| | || ||| | Sbjct 367427 TATCTCGTGACGAGGGTCTGCACTGTGACTTTGC--TTGCCTTCTCTACA-GCCTCCTCA 367371 Query 60157 A-AAAATGCCCTTCCAAGGATA---TTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAG 60212 | || | || | || |||||| ||| ||||| || ||| || | ||| Sbjct 367370 ACAATAAGCTC-TCTGAGGATAGGGTTCGAGAGATTATTTCCGATGCTGTCGATATAGAG 367312 Query 60213 AGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATG 60272 || |||||| || || || || || || || | || ||| | |||| ||| Sbjct 367311 AGGGAGTTCGTCTGCGATGCTCTCCCCTGTGCTCTTGTGGGGATGAATGCTGATCTCATG 367252 Query 60273 ACGCAGTACATTCAGTTTGTCGCGGACCG-CCTCATGG----CCCAGTTTGGAGAAGGAC 60327 | |||||||| ||||||| || || || | || ||| | ||| | |||| Sbjct 367251 AGCCAGTACATAGAGTTTGTTGCCGATCGTCTTCTTGGTGCTCTGGGTTACGCGAAG--- 367195 Query 60328 CAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGA 60387 || |||| || ||||| || |||||||||||| || || | | || || | Sbjct 367194 --ATGTACGAGGTATCAAACCCATTTGACTGGATGGAGCTTATTTCCCTTCAGGGAAAAA 367137 Query 60388 CCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | ||||| ||||||||| |||||||||| || Sbjct 367136 CTAACTTTTTTGAGAAGAGGGTCGGGGAATA 367106 >seq55201 Length=1221137 Score = 129 bits (142), Expect = 6e-25 Identities = 294/434 (68%), Gaps = 10/434 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||| || ||||| ||||| || |||||||||||| ||||| || || ||||||||| Sbjct 301300 GCTTTCGCTTGCGTTGAAGGTATTTTCTTCTCTGGCAGCTTCTGCGCCATCTTCTGGCTC 301359 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||| || | ||||| || || | ||||||||||||||||| || || || ||| Sbjct 301360 AAGAAGCGCGGTTTGATGCCCGGTCTCACATTCTCCAACGAGCTGATATCTCGTGATGAG 301419 Query 60111 GGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCC 60170 || |||||| || ||||| || | | ||| | | | | || | | ||| Sbjct 301420 GGTCTCCATTGCGACTTTGC-CTG-CCTTTTATATAGTCTTCTGATCAACAAG-ATTTCA 301476 Query 60171 AAGGATA---TTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACA 60227 |||| | ||| |||||||| | ||| || | ||||| ||||| | Sbjct 301477 GAGGAGAGGGTTCGAGAGATTGTTGCGGATGCTGTGGATATTGAGAGGGAGTTTGTTTGC 301536 Query 60228 GAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAG 60287 || || ||||||||| || | || ||| |||| | ||||| | || ||| || Sbjct 301537 GATGCACTTCCATGCGCTCTTGTGGGAATGAACGCCGATCTAATGAGCCGCTATATTGAG 301596 Query 60288 TTTGTCGCGGA-CCGCCTCATGGCCCAGTTTGGAGAAGGACCAATT-TACGGCGTGAATA 60345 |||||||| || | || || || | | ||| | | | | || || || || | Sbjct 301597 TTTGTCGCTGATCGGCTTCTAGGAGC--TCTGGGTTATGGCAAGTTGTATGGTGTATCAA 301654 Query 60346 ACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGC 60405 | || || |||||||||||| ||| || | | || ||||| || |||||||||||| Sbjct 301655 ATCCATTTGACTGGATGGAGCTCATATCACTTCAGGGTAAGACGAATTTCTTTGAGAAGA 301714 Query 60406 GGGTCGGGGATTAT 60419 |||||||||| ||| Sbjct 301715 GGGTCGGGGAATAT 301728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548024943062880