Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq24616 95.1 1e-14
seq65047 91.5 2e-13
seq67077 89.7 6e-13
>seq24616
Length=1354867
Score = 95.1 bits (104), Expect = 1e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680
||||||| ||| |||| ||||| |||| ||||||||||||||||||||||||||| |||
Sbjct 1140690 GACTGCTCTCGTTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 1140749
Query 79681 AATTGAGCTACGAAAGC 79697
|| |||||||||| |||
Sbjct 1140750 AACTGAGCTACGAGAGC 1140766
>seq65047
Length=442287
Score = 91.5 bits (100), Expect = 2e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 187363 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 187304
Query 79684 TGAGCTACGAAAGCA 79698
|||||||||||||||
Sbjct 187303 TGAGCTACGAAAGCA 187289
>seq67077
Length=1100081
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682
||||| ||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 511348 CTGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 511407
Query 79683 TTGAGCTACGAAAGCA 79698
|||||||||| ||||
Sbjct 511408 CTGAGCTACGAGAGCA 511423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546717335739600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |