Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq24616 95.1 1e-14 seq65047 91.5 2e-13 seq67077 89.7 6e-13 >seq24616 Length=1354867 Score = 95.1 bits (104), Expect = 1e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 ||||||| ||| |||| ||||| |||| ||||||||||||||||||||||||||| ||| Sbjct 1140690 GACTGCTCTCGTTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 1140749 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 1140750 AACTGAGCTACGAGAGC 1140766 >seq65047 Length=442287 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 187363 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 187304 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 187303 TGAGCTACGAAAGCA 187289 >seq67077 Length=1100081 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 511348 CTGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 511407 Query 79683 TTGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 511408 CTGAGCTACGAGAGCA 511423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546717335739600