Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq38797 102 7e-17 seq41242 93.3 4e-14 seq40947 91.5 1e-13 >seq38797 Length=1288649 Score = 102 bits (112), Expect = 7e-17 Identities = 149/207 (72%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| |||||| || || ||||| || ||||| || || |||| ||||||||| Sbjct 629649 TGGAGCGTGGACTCTTTCTGAATGTTATAGTCCGCAAGAGTGCGGCCGTCCTCAAGCTGT 629590 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| ||||| | |||||||| | || | | ||| |||||| ||| || Sbjct 629589 TTACCGGCAAAGATAAGCCTTTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTT- 629531 Query 39202 TGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCC 39257 || | ||| | | | || || ||| |||||| |||| |||||| ||||||| Sbjct 629530 TGCCTTTACGTTGTCAATTGTGTCCGAGCT---CTCCACCTCCAGGGTGATAGTTTTTCC 629474 Query 39258 CGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| |||||||| Sbjct 629473 AGTGAGGGTCTTCACAAATATTTGCAT 629447 >seq41242 Length=195047 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| ||||| || || ||||| || || | || ||||||||||| || ||||| Sbjct 146705 TCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 146764 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||| | |||||| || | || | || |||||||||| ||| || || | | Sbjct 146765 ATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTA 146824 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | |||||| |||||| |||| ||||| | |||||||| || || || ||| Sbjct 146825 TCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTCACA 146884 Query 39274 AAGATTTGCAT 39284 || || ||||| Sbjct 146885 AAAATCTGCAT 146895 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| ||||| || || ||||| || || | || ||||||||||| || ||||| Sbjct 151869 TCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 151928 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||| | |||||| || | || | || |||||||||| ||| || || | | Sbjct 151929 ATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTA 151988 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | |||||| |||||| |||| ||||| | |||||||| || || || ||| Sbjct 151989 TCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTCACA 152048 Query 39274 AAGATTTGCAT 39284 || || ||||| Sbjct 152049 AAAATCTGCAT 152059 >seq40947 Length=4604 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 ||||| || ||| || || || || || |||| || ||||| |||| ||||||||| Sbjct 1199 TGTAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGT 1140 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || ||||| || | |||||||| ||||||| | | ||| |||||| |||||| Sbjct 1139 TTCCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGG-ATTCCCTCCTTGTCCTGGATTTT 1081 Query 39201 CTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 || | | || || | | ||| ||| |||||| || | ||||| | || || | Sbjct 1080 -GGTCTTAACGTTCTCGATCGTGTCGGAACTCTCCACCTCAAGGGTGATTGTCTTGCCGG 1022 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 | || || ||||| || || ||||||| ||| Sbjct 1021 TGAGGGTCTTAACGAATATCTGCATCTATAC 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429163951687526