Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq38797 102 7e-17
seq41242 93.3 4e-14
seq40947 91.5 1e-13
>seq38797
Length=1288649
Score = 102 bits (112), Expect = 7e-17
Identities = 149/207 (72%), Gaps = 8/207 (4%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| |||||| |||||| || || ||||| || ||||| || || |||| |||||||||
Sbjct 629649 TGGAGCGTGGACTCTTTCTGAATGTTATAGTCCGCAAGAGTGCGGCCGTCCTCAAGCTGT 629590
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
|| || ||||| ||||| | |||||||| | || | | ||| |||||| ||| ||
Sbjct 629589 TTACCGGCAAAGATAAGCCTTTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTT- 629531
Query 39202 TGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCC 39257
|| | ||| | | | || || ||| |||||| |||| |||||| |||||||
Sbjct 629530 TGCCTTTACGTTGTCAATTGTGTCCGAGCT---CTCCACCTCCAGGGTGATAGTTTTTCC 629474
Query 39258 CGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || || || ||||| ||||||||
Sbjct 629473 AGTGAGGGTCTTCACAAATATTTGCAT 629447
>seq41242
Length=195047
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153
|| ||||| ||||| || || ||||| || || | || ||||||||||| || |||||
Sbjct 146705 TCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 146764
Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213
||||| | |||||| || | || | || |||||||||| ||| || || | |
Sbjct 146765 ATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTA 146824
Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273
| | |||||| |||||| |||| ||||| | |||||||| || || || |||
Sbjct 146825 TCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTCACA 146884
Query 39274 AAGATTTGCAT 39284
|| || |||||
Sbjct 146885 AAAATCTGCAT 146895
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153
|| ||||| ||||| || || ||||| || || | || ||||||||||| || |||||
Sbjct 151869 TCCTTTTGAATATTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 151928
Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213
||||| | |||||| || | || | || |||||||||| ||| || || | |
Sbjct 151929 ATAAGCCTCTGCTGATCTGGAGGAATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTA 151988
Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273
| | |||||| |||||| |||| ||||| | |||||||| || || || |||
Sbjct 151989 TCAATTGTATCGGAGCTCTCCACTTCCAAAGTGATGGTCTTTCCCGTAAGAGTCTTCACA 152048
Query 39274 AAGATTTGCAT 39284
|| || |||||
Sbjct 152049 AAAATCTGCAT 152059
>seq40947
Length=4604
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
||||| || ||| || || || || || |||| || ||||| |||| |||||||||
Sbjct 1199 TGTAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGT 1140
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200
|| || || ||||| || | |||||||| ||||||| | | ||| |||||| ||||||
Sbjct 1139 TTCCCGGCGAATATCAGCCTCTGCTGGTCCGGTGGG-ATTCCCTCCTTGTCCTGGATTTT 1081
Query 39201 CTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259
|| | | || || | | ||| ||| |||||| || | ||||| | || || |
Sbjct 1080 -GGTCTTAACGTTCTCGATCGTGTCGGAACTCTCCACCTCAAGGGTGATTGTCTTGCCGG 1022
Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290
| || || ||||| || || ||||||| |||
Sbjct 1021 TGAGGGTCTTAACGAATATCTGCATCTATAC 991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429163951687526
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |