Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq15016 116 2e-21 seq38797 109 4e-19 seq19607 104 2e-17 seq41242 89.7 3e-13 seq40947 82.4 5e-11 seq14985 82.4 5e-11 >seq15016 Length=583550 Score = 116 bits (128), Expect = 2e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| ||||| || |||||||| ||||| || || ||| Sbjct 437527 AAGATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTGGAGTCC 437586 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || || |||| |||||| | || || || || | |||||||| Sbjct 437587 TCTGATACAATCGACAACGTTAAGGCAAAAA-TCCAGGATAAGGAGGGCATTCCGCCAGA 437645 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||||| ||||| || ||||| || || || || |||| || || | | |||||| Sbjct 437646 TCAACAGCGCTTAATCTTCGCCGGGAAGCAGCTTGAGGACGGCCGTACCCTCGCCGATTA 437705 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||| || || || || || || Sbjct 437706 CAATATCCAGAAGGAATCGAC 437726 >seq38797 Length=1288649 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || |||||||| ||||| || || || Sbjct 628535 ATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAGGTGGAGAGTTCG 628594 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | |||| || || ||||| || || | || |||||||| Sbjct 628595 GATACTATTGACAACGTAAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCAG 628654 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || |||||||||||||| || ||||| | ||||| | | ||||||||| Sbjct 628655 CAAAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTTGCTGATTACAAC 628714 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || |||||||| | ||| ||||| Sbjct 628715 ATCCAGAAGGAGTCCACCCTTCATCTAGTT 628744 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| || || |||||||| || || ||||| | | Sbjct 628763 ATGCAGATCTTCGTAAAGACTCTCACTGGCAAGACGATCACCCTAGAGGTTGAGAGCTCT 628822 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || | | |||||||| ||| | || || || || Sbjct 628823 GACACCATTGACAACGTTAAGGCCAAGA-TCCAGGACAAAGAGGGTATCCCCCCGGACCA 628881 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || || ||||| | ||||| | | |||||||| Sbjct 628882 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTTGCTGATTACAA 628941 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || |||||||| | ||| | ||| Sbjct 628942 CATCCAGAAGGAGTCCACCCTCCATCTGGTT 628972 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| ||||| || ||||| || || ||||| | | Sbjct 629219 ATGCAGATCTTCGTGAAGACGCTCACTGGAAAGACCATCACCCTAGAGGTTGAAAGCTCC 629278 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || || || | || ||||| ||| Sbjct 629279 GACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAA 629338 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| ||||| || |||| |||||| || | ||| |||||| Sbjct 629339 CAGAGGCTTATCTTTGCGGGCAAGCAACTTGAGGACGGACGCACCTTGGCCGACTACAAC 629398 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 629399 ATCCAGAAAGAGTCCAC 629415 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| |||||||| ||||| || || || || | || Sbjct 629447 ATGCAAATATTTGTGAAGACCCTCACTGGAAAAACTATCACCCTGGAGGTGGAGAGCTCG 629506 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| ||| || ||||| || || | || || || || Sbjct 629507 GACACAATTGACAACGTAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 629566 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || |||||||| ||||| || || |||| |||||| | | || || ||| Sbjct 629567 CAAAGGCTTATCTTTGCCGGTAAACAGCTTGAGGACGGCCGCACTCTTGCGGACTATAAC 629626 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 629627 ATTCAGAAAGAGTCCAC 629643 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||| | || ||||| | | Sbjct 628991 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAGACCATCACCTTAGAGGTTGAGAGCTCT 629050 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || | | ||||| || || | || || || || Sbjct 629051 GACACCATTGACAACGTTAAGGCCAAGA-TCCAGGACAAGGAGGGAATCCCCCCGGACCA 629109 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | |||||||||||||| || || || || | ||||| | | || ||||| Sbjct 629110 ACAGAGGCTGATATTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAA 629169 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| ||||| || | || ||||| Sbjct 629170 CATTCAAAAGGAGTCTACTCTTCACTTAGT 629199 >seq19607 Length=286188 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| ||||| || ||||| || |||||||| ||||| || || ||| Sbjct 225508 AAGATGCAGATCTTCGTCAAAACTCTAACGGGGAAGACGATCACCCTCGAGGTGGAGTCC 225567 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || || |||| |||| | | || || || || | ||||| || Sbjct 225568 TCTGATACAATCGATAACGTTAAGGCAAAGA-TCCAGGATAAGGAGGGCATTCCGCCGGA 225626 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||||| ||||| || ||||| || || || || |||| || || | | |||||| Sbjct 225627 TCAACAGCGCTTAATCTTCGCCGGGAAGCAGCTTGAGGACGGCCGTACCCTCGCCGATTA 225686 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||| || || || || || || Sbjct 225687 CAATATCCAGAAGGAATCGAC 225707 >seq41242 Length=195047 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| |||||||| ||||| || || || || | | Sbjct 171387 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAGAGCTCT 171328 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | |||| | ||||| || || | || || || || Sbjct 171327 GATACCATTGACAATGTGAAGGCCAAAA-TCCAGGACAAGGAGGGCATCCCTCCCGACCA 171269 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || |||||||||||||| || ||||| |||| || || | | || ||||| Sbjct 171268 GCAAAGGTTGATATTTGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTGGCAGACTACAA 171209 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || || || Sbjct 171208 CATTCAAAAGGAATCGAC 171191 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || |||||||| || |||||| | ||||| || | | Sbjct 146895 ATGCAGATTTTTGTGAAGACTCTTACGGGAAAGACCATCACTTTGGAAGTGGAGAGCTCC 146836 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||| || |||||||| || | || |||||||| Sbjct 146835 GATACAATTGATAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAG 146776 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || ||||| || || || | |||||| | | || ||||| Sbjct 146775 CAGAGGCTTATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTCTTGCAGACTACAAT 146716 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 146715 ATTCAAAAGGAATCTAC 146699 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || |||||||| || |||||| | ||||| || | | Sbjct 152059 ATGCAGATTTTTGTGAAGACTCTTACGGGAAAGACCATCACTTTGGAAGTGGAGAGCTCC 152000 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||| || |||||||| || | || |||||||| Sbjct 151999 GATACAATTGATAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAG 151940 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || ||||| || || || | |||||| | | || ||||| Sbjct 151939 CAGAGGCTTATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTCTTGCAGACTACAAT 151880 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 151879 ATTCAAAAGGAATCTAC 151863 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || |||||||| || || ||||| | Sbjct 147351 ATGCAGATCTTCGTGAAAACCCTCACTGGGAAGACGATCACCCTTGAGGTTGAGAGTTCC 147292 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || || || || | || ||||| || Sbjct 147291 GACACCATTGATAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAG 147232 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || || || || | || ||| | | ||||| ||| Sbjct 147231 CAGAGACTGATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTATAAC 147172 Query 23791 ATACAAAAAGAGTCCACA 23808 || || || ||||||||| Sbjct 147171 ATCCAGAAGGAGTCCACA 147154 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || |||||||| || || ||||| | Sbjct 152515 ATGCAGATCTTCGTGAAAACCCTCACTGGGAAGACGATCACCCTTGAGGTTGAGAGTTCC 152456 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || || || || | || ||||| || Sbjct 152455 GACACCATTGATAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAG 152396 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || || || || | || ||| | | ||||| ||| Sbjct 152395 CAGAGACTGATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTATAAC 152336 Query 23791 ATACAAAAAGAGTCCACA 23808 || || || ||||||||| Sbjct 152335 ATCCAGAAGGAGTCCACA 152318 >seq40947 Length=4604 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| ||||| || || || || ||||||||||| || || || || | | Sbjct 1680 AATGCAGATTTTTGTTAAGACTCTTACTGGTAAAACGATCACCCTGGACGTGGAGAGCTC 1739 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| || |||| ||| | || | || ||| || || || || | ||||| |||| Sbjct 1740 GGATACAATTGAGAATGTGAAGTC-GAAGATTCAAGATAAGGAGGGGATTCCGCCGGATC 1798 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || | | || ||||| || || || || || |||| ||||| | | || |||| Sbjct 1799 AGCAAAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACGCTTGCGGACTACA 1858 Query 23789 ACATACAAAAAGAGTCCAC 23807 | ||||| ||||| || || Sbjct 1859 ATATACAGAAAGAATCAAC 1877 >seq14985 Length=335608 Score = 82.4 bits (90), Expect = 5e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| || || | || || |||||||| || || || |||||||| || || ||||| Sbjct 170256 GACAAGGAGGGCATTCCACCTGATCAACAACGATTGATTTTTGCCGGGAAGCAGTTGGAA 170197 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || || |||| ||||||||||| || || ||||| || | ||| | ||||| Sbjct 170196 GATGGTCGGACCTTAGCGGATTACAACATTCAGAAGGAGTCAACCCTCCATCTGGTTTTG 170137 Query 23824 AGGTTGCGAGGAGGATCA 23841 ||| | |||| ||| || Sbjct 170136 AGGCTTAGAGGCGGAACA 170119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337709280794216