Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq15016 116 2e-21
seq38797 109 4e-19
seq19607 104 2e-17
seq41242 89.7 3e-13
seq40947 82.4 5e-11
seq14985 82.4 5e-11
>seq15016
Length=583550
Score = 116 bits (128), Expect = 2e-21
Identities = 148/201 (74%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| ||||| |||||||| ||||| || |||||||| ||||| || || |||
Sbjct 437527 AAGATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACGATCACCCTCGAGGTGGAGTCC 437586
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| || || | || || |||| |||||| | || || || || | ||||||||
Sbjct 437587 TCTGATACAATCGACAACGTTAAGGCAAAAA-TCCAGGATAAGGAGGGCATTCCGCCAGA 437645
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||||||||| ||||| || ||||| || || || || |||| || || | | ||||||
Sbjct 437646 TCAACAGCGCTTAATCTTCGCCGGGAAGCAGCTTGAGGACGGCCGTACCCTCGCCGATTA 437705
Query 23787 CAACATACAAAAAGAGTCCAC 23807
||| || || || || || ||
Sbjct 437706 CAATATCCAGAAGGAATCGAC 437726
>seq38797
Length=1288649
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || ||||| || || |||||||| ||||| || || ||
Sbjct 628535 ATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAGGTGGAGAGTTCG 628594
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| |||| | |||| || || ||||| || || | || ||||||||
Sbjct 628595 GATACTATTGACAACGTAAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCAG 628654
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | | || |||||||||||||| || ||||| | ||||| | | |||||||||
Sbjct 628655 CAAAGGCTGATCTTTGCCGGCAAACAGCTTGAAGATGGCCGCACCCTTGCTGATTACAAC 628714
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || || |||||||| | ||| |||||
Sbjct 628715 ATCCAGAAGGAGTCCACCCTTCATCTAGTT 628744
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || ||||| || || |||||||| || || ||||| | |
Sbjct 628763 ATGCAGATCTTCGTAAAGACTCTCACTGGCAAGACGATCACCCTAGAGGTTGAGAGCTCT 628822
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || |||| | || | | |||||||| ||| | || || || ||
Sbjct 628823 GACACCATTGACAACGTTAAGGCCAAGA-TCCAGGACAAAGAGGGTATCCCCCCGGACCA 628881
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||||||||| || || ||||| | ||||| | | ||||||||
Sbjct 628882 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTTGCTGATTACAA 628941
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || || |||||||| | ||| | |||
Sbjct 628942 CATCCAGAAGGAGTCCACCCTCCATCTGGTT 628972
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || ||||| ||||| || ||||| || || ||||| | |
Sbjct 629219 ATGCAGATCTTCGTGAAGACGCTCACTGGAAAGACCATCACCCTAGAGGTTGAAAGCTCC 629278
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || || || || || | || ||||| |||
Sbjct 629279 GACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAA 629338
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || ||||| ||||| ||||| || |||| |||||| || | ||| ||||||
Sbjct 629339 CAGAGGCTTATCTTTGCGGGCAAGCAACTTGAGGACGGACGCACCTTGGCCGACTACAAC 629398
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || |||||||||||
Sbjct 629399 ATCCAGAAAGAGTCCAC 629415
Score = 95.1 bits (104), Expect = 8e-15
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || |||||||| |||||||| ||||| || || || || | ||
Sbjct 629447 ATGCAAATATTTGTGAAGACCCTCACTGGAAAAACTATCACCCTGGAGGTGGAGAGCTCG 629506
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | |||| ||| || ||||| || || | || || || ||
Sbjct 629507 GACACAATTGACAACGTAAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 629566
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | | || |||||||| ||||| || || |||| |||||| | | || || |||
Sbjct 629567 CAAAGGCTTATCTTTGCCGGTAAACAGCTTGAGGACGGCCGCACTCTTGCGGACTATAAC 629626
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || |||||||||||
Sbjct 629627 ATTCAGAAAGAGTCCAC 629643
Score = 84.2 bits (92), Expect = 1e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || || || || || || ||||| | || ||||| | |
Sbjct 628991 ATGCAGATCTTCGTGAAGACTCTAACCGGCAAGACCATCACCTTAGAGGTTGAGAGCTCT 629050
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| || |||| | || | | ||||| || || | || || || ||
Sbjct 629051 GACACCATTGACAACGTTAAGGCCAAGA-TCCAGGACAAGGAGGGAATCCCCCCGGACCA 629109
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||| | | |||||||||||||| || || || || | ||||| | | || |||||
Sbjct 629110 ACAGAGGCTGATATTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAA 629169
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| ||||| ||||| || | || |||||
Sbjct 629170 CATTCAAAAGGAGTCTACTCTTCACTTAGT 629199
>seq19607
Length=286188
Score = 104 bits (114), Expect = 2e-17
Identities = 145/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| ||||| ||||| || ||||| || |||||||| ||||| || || |||
Sbjct 225508 AAGATGCAGATCTTCGTCAAAACTCTAACGGGGAAGACGATCACCCTCGAGGTGGAGTCC 225567
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| || || | || || |||| |||| | | || || || || | ||||| ||
Sbjct 225568 TCTGATACAATCGATAACGTTAAGGCAAAGA-TCCAGGATAAGGAGGGCATTCCGCCGGA 225626
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||||||||| ||||| || ||||| || || || || |||| || || | | ||||||
Sbjct 225627 TCAACAGCGCTTAATCTTCGCCGGGAAGCAGCTTGAGGACGGCCGTACCCTCGCCGATTA 225686
Query 23787 CAACATACAAAAAGAGTCCAC 23807
||| || || || || || ||
Sbjct 225687 CAATATCCAGAAGGAATCGAC 225707
>seq41242
Length=195047
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || |||||||| |||||||| ||||| || || || || | |
Sbjct 171387 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAGAGCTCT 171328
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | |||| | ||||| || || | || || || ||
Sbjct 171327 GATACCATTGACAATGTGAAGGCCAAAA-TCCAGGACAAGGAGGGCATCCCTCCCGACCA 171269
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| | || |||||||||||||| || ||||| |||| || || | | || |||||
Sbjct 171268 GCAAAGGTTGATATTTGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTGGCAGACTACAA 171209
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||| || || ||
Sbjct 171208 CATTCAAAAGGAATCGAC 171191
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || || || || |||||||| || |||||| | ||||| || | |
Sbjct 146895 ATGCAGATTTTTGTGAAGACTCTTACGGGAAAGACCATCACTTTGGAAGTGGAGAGCTCC 146836
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || |||| | | || ||| || |||||||| || | || ||||||||
Sbjct 146835 GATACAATTGATAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAG 146776
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || ||||| || ||||| || || || | |||||| | | || |||||
Sbjct 146775 CAGAGGCTTATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTCTTGCAGACTACAAT 146716
Query 23791 ATACAAAAAGAGTCCAC 23807
|| ||||| || || ||
Sbjct 146715 ATTCAAAAGGAATCTAC 146699
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || || || || |||||||| || |||||| | ||||| || | |
Sbjct 152059 ATGCAGATTTTTGTGAAGACTCTTACGGGAAAGACCATCACTTTGGAAGTGGAGAGCTCC 152000
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || |||| | | || ||| || |||||||| || | || ||||||||
Sbjct 151999 GATACAATTGATAACGTGAAGGCAAAGATCCAGGACAAAGAGGGCATTCCTCCAGATCAG 151940
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || ||||| || ||||| || || || | |||||| | | || |||||
Sbjct 151939 CAGAGGCTTATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTCTTGCAGACTACAAT 151880
Query 23791 ATACAAAAAGAGTCCAC 23807
|| ||||| || || ||
Sbjct 151879 ATTCAAAAGGAATCTAC 151863
Score = 82.4 bits (90), Expect = 5e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| ||||||||||| || || |||||||| || || ||||| |
Sbjct 147351 ATGCAGATCTTCGTGAAAACCCTCACTGGGAAGACGATCACCCTTGAGGTTGAGAGTTCC 147292
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | || || || || || || || | || ||||| ||
Sbjct 147291 GACACCATTGATAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAG 147232
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || ||||| ||||| || || || || | || ||| | | ||||| |||
Sbjct 147231 CAGAGACTGATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTATAAC 147172
Query 23791 ATACAAAAAGAGTCCACA 23808
|| || || |||||||||
Sbjct 147171 ATCCAGAAGGAGTCCACA 147154
Score = 82.4 bits (90), Expect = 5e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| ||||||||||| || || |||||||| || || ||||| |
Sbjct 152515 ATGCAGATCTTCGTGAAAACCCTCACTGGGAAGACGATCACCCTTGAGGTTGAGAGTTCC 152456
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | || || || || || || || | || ||||| ||
Sbjct 152455 GACACCATTGATAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAG 152396
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || ||||| ||||| || || || || | || ||| | | ||||| |||
Sbjct 152395 CAGAGACTGATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTATAAC 152336
Query 23791 ATACAAAAAGAGTCCACA 23808
|| || || |||||||||
Sbjct 152335 ATCCAGAAGGAGTCCACA 152318
>seq40947
Length=4604
Score = 82.4 bits (90), Expect = 5e-11
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||||||||| ||||| || || || || ||||||||||| || || || || | |
Sbjct 1680 AATGCAGATTTTTGTTAAGACTCTTACTGGTAAAACGATCACCCTGGACGTGGAGAGCTC 1739
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||| || |||| ||| | || | || ||| || || || || | ||||| ||||
Sbjct 1740 GGATACAATTGAGAATGTGAAGTC-GAAGATTCAAGATAAGGAGGGGATTCCGCCGGATC 1798
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| || | | || ||||| || || || || || |||| ||||| | | || ||||
Sbjct 1799 AGCAAAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACGCTTGCGGACTACA 1858
Query 23789 ACATACAAAAAGAGTCCAC 23807
| ||||| ||||| || ||
Sbjct 1859 ATATACAGAAAGAATCAAC 1877
>seq14985
Length=335608
Score = 82.4 bits (90), Expect = 5e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763
||||| || || | || || |||||||| || || || |||||||| || || |||||
Sbjct 170256 GACAAGGAGGGCATTCCACCTGATCAACAACGATTGATTTTTGCCGGGAAGCAGTTGGAA 170197
Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823
|| | || || |||| ||||||||||| || || ||||| || | ||| | |||||
Sbjct 170196 GATGGTCGGACCTTAGCGGATTACAACATTCAGAAGGAGTCAACCCTCCATCTGGTTTTG 170137
Query 23824 AGGTTGCGAGGAGGATCA 23841
||| | |||| ||| ||
Sbjct 170136 AGGCTTAGAGGCGGAACA 170119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337709280794216
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