Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26]
72,902 sequences; 1,008,684,112 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq55201 95.1 1e-14
>seq55201
Length=1221137
Score = 95.1 bits (104), Expect = 1e-14
Identities = 242/368 (66%), Gaps = 3/368 (1%)
Strand=Plus/Minus
Query 4799 TTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTAT 4858
|||||| || ||||| || ||||| || | || || ||||||||||| || || ||
Sbjct 301194 TTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACATTTCGGAGTGAAT 301135
Query 4859 ATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTT 4918
||||| || || |||||||| ||||| || | ||| || | | ||||||||||
Sbjct 301134 GTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAGTTGAACTTCGCG 301075
Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978
|||| | ||| ||| || || ||||| || || ||||| || || |
Sbjct 301074 CATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCGGCAAAGAAGGCGAG 301015
Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTGGGGCAAATC 5035
|| || | | |||| | ||||| | ||||| | | |||||| ||| ||
Sbjct 301014 GACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCCCAGTGACGCAGGTC 300955
Query 5036 TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGA 5095
|| | | || || ||||| ||||||| || || || || ||||| ||||||||
Sbjct 300954 TTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCTTTCTTGTACATCTC 300895
Query 5096 CCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGGTGTAAGAAG 5155
||| || | ||||| | ||||||| ||| || | || | ||| || | ||||||
Sbjct 300894 CCAGATCTGCGGATAGCGGATCGGAAACATGCAGAAGCGGTCGGGGTTTGGAGCAAGAAG 300835
Query 5156 CGGTTCTT 5163
|| ||||
Sbjct 300834 AGGCTCTT 300827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426670169366366
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |