Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq55201 95.1 1e-14 >seq55201 Length=1221137 Score = 95.1 bits (104), Expect = 1e-14 Identities = 242/368 (66%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 4799 TTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTAT 4858 |||||| || ||||| || ||||| || | || || ||||||||||| || || || Sbjct 301194 TTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACATTTCGGAGTGAAT 301135 Query 4859 ATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTT 4918 ||||| || || |||||||| ||||| || | ||| || | | |||||||||| Sbjct 301134 GTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAGTTGAACTTCGCG 301075 Query 4919 ACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAA 4978 |||| | ||| ||| || || ||||| || || ||||| || || | Sbjct 301074 CATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCGGCAAAGAAGGCGAG 301015 Query 4979 AACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT---TTTTTCCAGTGGGGCAAATC 5035 || || | | |||| | ||||| | ||||| | | |||||| ||| || Sbjct 301014 GACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCCCAGTGACGCAGGTC 300955 Query 5036 TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGA 5095 || | | || || ||||| ||||||| || || || || ||||| |||||||| Sbjct 300954 TTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCTTTCTTGTACATCTC 300895 Query 5096 CCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGGTGTAAGAAG 5155 ||| || | ||||| | ||||||| ||| || | || | ||| || | |||||| Sbjct 300894 CCAGATCTGCGGATAGCGGATCGGAAACATGCAGAAGCGGTCGGGGTTTGGAGCAAGAAG 300835 Query 5156 CGGTTCTT 5163 || |||| Sbjct 300834 AGGCTCTT 300827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426670169366366