Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq55201 174 2e-38 seq25504 147 3e-30 seq2987 100 4e-16 >seq55201 Length=1221137 Score = 174 bits (192), Expect = 2e-38 Identities = 379/558 (68%), Gaps = 11/558 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| || ||||| ||||| ||||| | | || | ||||| || ||||||||| Sbjct 301442 CAGGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGA 301383 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| | || || || |||||||| || || || || ||| | ||||| ||||| Sbjct 301382 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGCTGCCAGAGAAGAA 301324 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-- 48317 || ||||| ||| || || ||| || || | ||| | || || | | | || Sbjct 301323 AATACCTTCAACGCAAGCGAAAGCGAGAA-TC-CGCTCAGCAAATGTATCAGAGGCGTCA 301266 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || | ||||| | |||||| || || || || || || || ||| | Sbjct 301265 ATCCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCACGA 301206 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || || | | |||||| || ||||| | |||||| || | | ||||||||||||| Sbjct 301205 AAAAGGAGGGATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACATT 301146 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 ||||||||||| |||||||| || |||||||| ||||| || | || || | || Sbjct 301145 TCGGAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAGT 301086 Query 48498 TGTACCTC-CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 || || || || | ||||| | || | |||||| || || ||||| ||| || Sbjct 301085 TGAACTTCGCGCA-TGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCGGC 301027 Query 48557 AAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGT---TTATTCCA 48613 ||| || || | || || | | || | |||| ||| || ||| | || ||| Sbjct 301026 AAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCCCA 300967 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 || | | |||| ||| | || || ||||| || ||||| || || ||||||||||| Sbjct 300966 GTGACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCTTT 300907 Query 48674 TTTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 300906 CTTGTACATCTCCCAGAT 300889 >seq25504 Length=639989 Score = 147 bits (162), Expect = 3e-30 Identities = 369/557 (66%), Gaps = 9/557 (2%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| ||||| || ||||| || || | | || | ||||| || || |||||| Sbjct 367391 CAAGCAAAGTCACAGTGCAGACCCTCGTCACGAGATATGAGCTCGTTGGAGAAGGTGAGA 367450 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 ||||||||||| || | || |||||||| || || || ||| || || ||||| Sbjct 367451 CCGGGCATTAGCCCTCTCTTCTTGAGCCAGAAGATGGCACAGAAGCTACCGGAGAAGAAG 367510 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCT-CTCTCCGTAACTGGCTTCGTTGTGT-- 48317 || || || ||| ||||| || ||| | | ||| | || || || | | || Sbjct 367511 ATTCCCTCAACGCAAGCAAACGC---AAGGATGCGCTCTGCAAATGAATTGGAGGCGTCG 367567 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| ||| | ||||| | |||||| || || || | || || || |||| Sbjct 367568 ATCCAACGTAGGGCCCACTGAGCCTTGCGGGCGACGCAGGGGACGGTCTCGATGGCATGG 367627 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 |||||| | ||| ||| | |||||| | ||| || || | | ||| || ||||| Sbjct 367628 AAGAGATGGGATTTCTCACAGGAATCTTTGATGTATGTTTCGAGAAGAAGGCTGTACATC 367687 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 |||||||| || ||||| || || ||||||||||| || || | || || | || | Sbjct 367688 TCGGAGTGGATGTTTTCGATGGCAATCTGAAATCCATAGAAGGCGCGAGCCTCCGGGAGC 367747 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 ||||||||| | || || | || | ||||| || ||||||||| |||||| Sbjct 367748 TGTACCTCCCTCATGAAGCGGCCGGCAAGGTTCTCGAGGACGATTCCATCAGATGCAGCA 367807 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG---TTTATTCCAG 48614 || || || | || || | | || | |||| || || || || || |||| Sbjct 367808 AAGAAGGCGAGAACGTGGGTGACGAAGTGGCGCTCGTCAGAGGTGAGGGATTGATCCCAG 367867 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 | | || |||| || | || ||||| || |||||||| || || || || ||||| Sbjct 367868 TGACGGAGGTCTTGGGAGAGGTCGACTTCCTCTGCTGTCCAGAAGGAGGCTTCGGCTTTC 367927 Query 48675 TTATACATATTCCATAT 48691 || ||||| | ||| || Sbjct 367928 TTGTACATCTCCCAGAT 367944 >seq2987 Length=13944 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||| | || || | |||| | |||| |||||| |||| |||||| Sbjct 1681 ACCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACC 1740 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || |||||||||||||||||| || ||||||||| | || |||||||| || || Sbjct 1741 ATTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGA 1800 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || ||| || | || || || || ||||| || || Sbjct 1801 CACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAAAGTATCATAAAT 1860 Query 78338 ACCCTCTATACTGTCATCCATCATG 78362 || || || || ||||| ||||| Sbjct 1861 CCCATCAATGCTATCATCTTTCATG 1885 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| |||||||| || | || || || ||||| ||||||||| | ||| | | ||| Sbjct 1996 AGTGCCTGCATTGAAGAGGGTAGGGGAGGCATGTGTAAACCATCGCTGAGACATCAAATT 2055 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| || || || || || || || || || || || | || | |||||| Sbjct 2056 ATATGTTTTTATTGCAGACTCAATATCATCTTTGTGGATCCCAACAGAAACCCTCATCAA 2115 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||||||||| || ||| | | |||||| | ||| ||| | || | Sbjct 2116 CATGTGCTGAGGTCTTTCCACAACCTTCCCAGAAACTTTCAAAAGGTAGGATCTCTCAAG 2175 Query 78578 AGTTTTAAAACCAAAATA 78595 ||||||||||||||||| Sbjct 2176 CGTTTTAAAACCAAAATA 2193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694035765689280