Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq55201 149 9e-31 seq2987 100 4e-16 >seq55201 Length=1221137 Score = 149 bits (164), Expect = 9e-31 Identities = 389/583 (67%), Gaps = 13/583 (2%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| || ||||| || || ||||| | | || | ||||| || |||||||| Sbjct 301442 CAGGCAAAGTCGCAATGGAGACCCTCATCACGAGATATCAGCTCGTTGGAGAATGTGAGA 301383 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAA 46748 || ||||| | || ||||| |||||||| || || || || ||| | ||||| ||||| Sbjct 301382 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGCTGCCAGAGAAGAA 301324 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTA---TG 46805 || ||||| || ||||| |||| || || | ||| | || || |||| | Sbjct 301323 AATACCTTCAACGCAAGCGAAAGCGAGAA-TC-CGCTCAGCAAATGT-ATCAGAGGCGTC 301267 Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 |||||| | | ||||| | |||||| || || || || || || || ||| Sbjct 301266 AATCCAGCGCAGCGCCCACTGAGCCTTGCGAGCGACGCAGGGGATGGTCTCGATGGCACG 301207 Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 ||| || | | |||||| | ||||| | || || || | | |||||||||||| Sbjct 301206 AAAAAGGAGGGATTTTTCCTTTGAGTCTTTGATGTAAGTCTCGAGGAGAAGACTATACAT 301147 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985 ||| || |||||||||||||| || |||||||| ||||| || | || || | | Sbjct 301146 TTCGGAGTGAATGTTTTCAATGGCGATCTGAAAGCCGTAGAATGCGCGAGCCTCCGGGAG 301087 Query 46986 CTGTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAG 47044 || || || | || ||||| | | | |||||| || || ||||| ||| | Sbjct 301086 TTGAACTTC-GCGCATGAATCGGCCGGCTAGGTTCTCAAGGACGATACCATCTGAAGCGG 301028 Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TTATTCC 47101 |||| || || | || || | | || | || |||| || ||| | || || Sbjct 301027 CAAAGAAGGCGAGGACGTGGGTGACGAAGTGGCGCTCGTCGGAGGTAAGTGTGTGATCCC 300968 Query 47102 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161 ||| | | |||| ||| | || || ||||| || |||||||| || |||||||||| Sbjct 300967 AGTGACGCAGGTCTTGTGAGAGGTCGACCTCTTCCGCAGTCCAGAAGGAAGCCTCTGCTT 300908 Query 47162 TTTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 | || ||||| | ||| || | |||| |||||||||| || Sbjct 300907 TCTTGTACATCTCCCAGATCTGCGGATAGCGGATCGGAAACAT 300865 >seq2987 Length=13944 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || ||||| | ||| | ||||| | |||| | |||| |||||| |||| ||| || Sbjct 1681 ACCCCCTTGATCAACATAACGAGCAGTATCATTACATACTCGCAACATGGGAACAATACC 1740 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| || ||||||||| ||||||||||| || || Sbjct 1741 ATTTGATGTTCCATTTGTTCCACGGATGTAACTTCCAGTGGCACGAATATTGTGAACTGA 1800 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || || || | ||||| || || || ||||| || Sbjct 1801 CACACCAATTCCTCCAGCAGACTTGCTAATAACTGCACACTCCTTTAAAGTATCATAAAT 1860 Query 76933 GCCCTCTATACTATCATCCATCATG 76957 || || || |||||||| ||||| Sbjct 1861 CCCATCAATGCTATCATCTTTCATG 1885 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| |||||||| || | ||||| || ||||| || |||||| | ||| | | ||| Sbjct 1996 AGTGCCTGCATTGAAGAGGGTAGGGGAGGCATGTGTAAACCATCGCTGAGACATCAAATT 2055 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| || | | || ||||| || || || || |||| || | |||||| Sbjct 2056 ATATGTTTTTATTGCAGACTCAATATCATCTTTGTGGATCCCAACAGAAACCCTCATCAA 2115 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||||| ||| ||| ||| | | |||||| | ||| ||| | || | Sbjct 2116 CATGTGCTGAGGTCTTTCCACAACCTTCCCAGAAACTTTCAAAAGGTAGGATCTCTCAAG 2175 Query 77173 AGTTTTAAAACCAAAATA 77190 ||||||||||||||||| Sbjct 2176 CGTTTTAAAACCAAAATA 2193 Score = 89.7 bits (98), Expect = 7e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 76521 CAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACC 76580 |||| |||||||||||| |||| |||||||| || ||||| || || | ||||||| Sbjct 528 CAAAATCATCTCCCCAACAATCAGCCAAACCAAGAGCCTCATTAGGGCAAAATAATGACC 587 Query 76581 ACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATA 76640 |||| ||| || |||| || ||| || |||||||| ||||| || ||| ||| | Sbjct 588 ACTCTTCATTACTCTGGACCCTTTCCATGAAAAGATCAGGAATCCAAAGGGCATAAAAAA 647 Query 76641 GATCTCGGGTTCTACGTTCTTC 76662 |||||| || ||| | || || Sbjct 648 GATCTCTGGCCCTATGCTCCTC 669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712284720704640