Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq13858 125 2e-23 seq14226 109 1e-18 seq10487 109 1e-18 seq8084 105 1e-17 seq15348 104 5e-17 seq13713 104 5e-17 seq12465 104 5e-17 seq11678 104 5e-17 seq11181 104 5e-17 seq10019 104 5e-17 seq9974 104 5e-17 seq8183 104 5e-17 seq6062 104 5e-17 seq5542 104 5e-17 seq110 98.7 2e-15 seq12033 89.7 1e-12 >seq13858 Length=133588 Score = 125 bits (138), Expect = 2e-23 Identities = 305/455 (67%), Gaps = 8/455 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||||| | || || || || || | || || || ||| Sbjct 60215 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 60156 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 60155 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 60096 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||| ||||||||||| ||||| | |||| | || | || ||| Sbjct 60095 CTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 60036 Query 230353 CAGAACAAGCTACCATTCGAGA--CG-GTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 | |||||| | | |||| || ||| | ||| | | || || || || | | Sbjct 60035 CGTGGCAAGCT-CGA--CGAGGACCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATC 59979 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || |||||| | || ||||| | || ||||| || | |||||||||| | || Sbjct 59978 GAGCGCGAGTTCGTCTGCGACGCGCTCCCG-GTCGCGCTCGTCGGCATGAACGGCGGGCT 59920 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | ||||||||||| ||||| || |||||| | | | || || || | | ||| Sbjct 59919 CATGAGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCTCATGGCGCTCGGCTGCAAGAG 59860 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| | ||||| || | | ||||||||||| ||||| || |||||||| Sbjct 59859 GATGTACAACGCCGCCAACCCATTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGAC 59800 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||| || ||||| ||| | || || |||| Sbjct 59799 AAACTTCTTTGAGAAGCGCGTCGGGGAGTACCAGA 59765 >seq14226 Length=131416 Score = 109 bits (120), Expect = 1e-18 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||||||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 48843 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 48784 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 48783 AGCCCCACGGTGGGC 48769 >seq10487 Length=52512 Score = 109 bits (120), Expect = 1e-18 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||||||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 48877 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 48818 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 48817 AGCCCCACGGTGGGC 48803 >seq8084 Length=202404 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 61750 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 61691 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 61690 CCCCACGGTGGGC 61678 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||| |||||||||||| || || |||| || |||||||||||||||||| Sbjct 52011 GCCCGTCTAGCTCACTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 52070 Query 165770 CCCACG 165775 |||||| Sbjct 52071 CCCACG 52076 >seq15348 Length=125033 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 9746 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9687 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9686 CCCACGGTGGGC 9675 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| |||| || |||||||||||||||||| Sbjct 13546 GCCCGTCTAGCTCAGTCGGTAGAGCGCATTTTTTTTTTCCTTGTGGTCGTGGGTTCGAGC 13487 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13486 CCCACGGTGGGC 13475 >seq13713 Length=27948 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1935 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1994 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1995 CCCACGGTGGGC 2006 >seq12465 Length=35640 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 11510 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11569 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11570 CCCACGGTGGGC 11581 >seq11678 Length=41425 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 12033 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11974 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11973 CCCACGGTGGGC 11962 >seq11181 Length=155859 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 94515 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 94456 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 94455 CCCACGGTGGGC 94444 >seq10019 Length=57599 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 7514 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7455 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7454 CCCACGGTGGGC 7443 >seq9974 Length=58277 Score = 104 bits (114), Expect = 5e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 |||| | ||||||||||||||||| |||||||||| || || |||| || |||||||||| Sbjct 21309 AAACACATGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 21368 Query 165762 GTTCGAGCCCCACGATGGGC 165781 |||||||||||||| ||||| Sbjct 21369 GTTCGAGCCCCACGGTGGGC 21388 >seq8183 Length=87020 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 47492 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 47551 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 47552 CCCACGGTGGGC 47563 >seq6062 Length=92985 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 84684 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84625 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 84624 CCCACGGTGGGC 84613 >seq5542 Length=349524 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 35708 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 35767 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 35768 CCCACGGTGGGC 35779 >seq110 Length=114224 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7949 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8008 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8009 CCCACGGTGGGC 8020 >seq12033 Length=38623 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||| |||||||||| | || || |||| || ||||||||||||| |||| Sbjct 22590 GCCCGTCTAGCTCAATCGGTAGAGCACAAGGCTCTTAACCTTGTGGTCGTGGGTTTGAGC 22649 Query 165770 CCCACGATGGGC 165781 |||||||| ||| Sbjct 22650 CCCACGATTGGC 22661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057587683440680