Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq13858 105 1e-17 >seq13858 Length=133588 Score = 105 bits (116), Expect = 1e-17 Identities = 300/451 (67%), Gaps = 10/451 (2%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| | || | |||||||| ||||| ||||| ||||| || || || | ||||| Sbjct 59769 GTACTCCCCGACGCGCTTCTCAAAGAAGTTTGTCTTCCCCTGCAGCGAGATGAGCTCCAT 59828 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||||||||||||| |||||||| | | | | | || ||| | ||| | Sbjct 59829 CCAGTCGAATGGGTTGGCGGCGTTGTACATCCTCTTGCAGCCGAGCGCCATGAGCAGGCG 59888 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||||| Sbjct 59889 GTCAGCAACGAACTCGATGTACTGGCTCATGAGCCCGCCGTTCATGCCGACGAGCGCGAC 59948 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 || |||| || || | | ||| |||| ||| | | || |||| || || || Sbjct 59949 CGGGAGCG-CGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGC 60007 Query 157497 GAACTCTCTCC-CGCGGCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555 | || | ||| || | ||| | ||| | | ||||| ||| | | | || Sbjct 60008 GGACGCGGTCCTCGTCG-AGCTTGCCACGGAGGAGGTCGTAGAGGAG-GCAGGCGAAGTC 60065 Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTT 157614 || ||| || || ||||| | || |||||| ||| | ||| | | ||| | | Sbjct 60066 GCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCC--GGCATG 60123 Query 157615 CTGC--CGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCC 157672 || |||||||| |||||| ||||||||||||| || || ||| | |||||| Sbjct 60124 AGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCG 60183 Query 157673 AGACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 | |||| |||| |||| || | ||| |||| Sbjct 60184 ACGCAGGCGAAGGCGACGAGGCGCTCGGCGA 60214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073526521928448