Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq12936 104 2e-17 seq12004 87.8 2e-12 seq11062 82.4 8e-11 >seq12936 Length=140512 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || |||| ||| | || | ||| | || ||||| ||||||||||| ||||| Sbjct 38869 GCCTCCACGTAGACGGAGGACAAGGTGCAAGGTGGACTCCTTTTGAATGTTGTAATCTGC 38928 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | | ||| |||||||| || ||||| |||| || |||||||| || ||||| Sbjct 38929 AAGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCTGGAGG 38988 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| | |||| || | | || | ||||| | | ||||| Sbjct 38989 AATTCCTTCCTTGTC-CTGAATCTTTGCCTTGACATTGTCAATCGTGTCAGAAGACTCCA 39047 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | |||||||| || | || || || || || ||||| Sbjct 39048 CCTCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 39096 >seq12004 Length=146743 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||| | || ||||| || || ||||||||||| Sbjct 145626 GCCACCACGGAGACGGAGCACCAAGTGCAGGGTGGACTCCTTCTGTATGTTATAATCCGC 145567 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| ||| || ||||| || || || |||| || || ||||| || || || Sbjct 145566 GAGTGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 145507 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||| || | | |||||| Sbjct 145506 GATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTATCGATTGTATCAGACGACTCCAC 145447 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| |||||||| || || || || || ||||| Sbjct 145446 CTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCAT 145399 >seq11062 Length=46929 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || || || |||| || | ||||| || ||||| ||||| || ||| Sbjct 43863 TCCTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCCTCCTTG 43804 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || | | || | |||||| | | ||||||||||| ||| | Sbjct 43803 TCCTGGATTTTGGCCTTGACATTGTCGATTGTGTCAGAAGACTCCACCTCAAGGGTGATG 43744 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | || || ||||| || ||||| Sbjct 43743 GTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 43709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495955882851200