Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq16195 105 1e-17 seq7477 84.2 3e-11 >seq16195 Length=15917 Score = 105 bits (116), Expect = 1e-17 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 243 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 184 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| ||||||||||| || |||||||| |||| |||| || || || | ||||| Sbjct 183 CCCGGCATGAGGCCACGCTTCTTGAGCCAAAAGATGG-CGCAGAAGGAGCCCAAGAAGAA 125 Query 50079 GATTCCTTCTAC 50090 ||| || ||||| Sbjct 124 GATGCCCTCTAC 113 >seq7477 Length=85115 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | || || || || || |||||||| | ||||| || | | Sbjct 75466 GTGCCAGCATTGAAAAGCGTCGGTGAGGCATGTGTAAACCAGCGCTGAGACATGAGGTGG 75407 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||||||| || || || || || || | ||| || || || || | || | ||||| Sbjct 75406 TACGTCTTGATGGCAGACTCAATGTCTTCCTTG-TGTATCCCCACTGAAACCCTCATTAG 75348 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| ||||||||||| | ||| | ||||| | |||||| | |||| Sbjct 75347 CATGTGCTGTGGTCTTTCAACAACCTTTCCCCCAAGCTTCAAGAGGTAAGACCTCTCCAG 75288 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || || ||||| |||| || |||||| | |||||||| || Sbjct 75287 AGTCTTGAAGCCAAAGTAGTCATAATCAAAGTCCCTATCGTAAATTAT 75240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718112253315040