Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq13858 179 5e-40 seq16195 114 2e-20 seq8389 114 2e-20 seq10755 107 3e-18 >seq13858 Length=133588 Score = 179 bits (198), Expect = 5e-40 Identities = 583/887 (66%), Gaps = 30/887 (3%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || || |||| | | || ||||| | ||||| ||||| ||| |||| Sbjct 60634 CCATGTTCCCGATACGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCT 60575 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT-CGTTTG 125111 | ||||| | ||| ||||| || || || ||| | | | ||||| | || | Sbjct 60574 TCTGGACCGCCGAGGAGGTGGACCTCTCGGCCGACGCGCGCCACTGGGATTCGGCGCTCT 60515 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 | || ||||| | || || || ||| | | |||||||| |||| |||||| || Sbjct 60514 CCCCCGAC-GAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGC 60456 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTC 125230 ||||| ||| || || | || ||| | || || || | | |||| | | Sbjct 60455 ATCGTGCTCGAGAACCTCGCCTCCCGCTTCATGTCC-GACGTGCAGGTCGCCGAGGCG-C 60398 Query 125231 GTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | || || || || ||||| ||| || |||||| | |||||||| |||||||| | Sbjct 60397 GCGCCTTCTATGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGC 60338 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGAC 125348 || | || | |||||| ||||| | || || || || ||||| ||| |||||| Sbjct 60337 TGCTGGAGACGTACATCCGCGA-CGGCGCCGAGAAGGACCGCCTCTTCCGCGCCATCGAC 60279 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || || || | | || ||||| | |||| ||| || |||||||| | || || Sbjct 60278 ACCGTCCCCGCCGTCCGCCGCAAGGCCGACTGGGCGATGCGCTGGATCGACGGCGGGGAG 60219 Query 125409 T-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||||| |||| | || || || |||||| ||| |||||||||||||| ||||| Sbjct 60218 CGCTTCG----CCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGG 60163 Query 125468 -TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | || |||| ||||||| ||||||||||||||||| |||||||| || || || | Sbjct 60162 CTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCT 60104 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTC 125586 |||||| | || || || ||||||||||| ||||| ||||| ||| || || Sbjct 60103 CCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCT----- 60049 Query 125587 GCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646 | || | || | ||| | || || | ||| || ||| | | || || ||| Sbjct 60048 -CTACGACCTCC--TCCGTGGCAAGCTCGA-CGAGGACCGCGTCCGCGAGATCGTCGCCG 59993 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | ||||| || || | ||||| | ||| | || |||||| | | |||| Sbjct 59992 ACGCCGTCGACATCGAGCGCGAGTTCGTCTGCGACGCGCTCCCGGTCGCGCTCGTCGGCA 59933 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 ||||| || ||| ||| || ||||||| ||||| || || || || || || | | Sbjct 59932 TGAACGGCGGGCTCATGAGCCAGTACATCGAGTTCGTTGCTGACCGCCTGCT---CATGG 59876 Query 125767 TGATTGGCCGCAA---GATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | | ||| |||| ||| ||||||||| || || || || | ||| ||| | Sbjct 59875 CGCTCGGCTGCAAGAGGATGTACAACGCCGCCAACCCATTCGACTGGATGGAGCTCATCT 59816 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || |||| ||||| ||||| || |||||| ||| | |||||| Sbjct 59815 CGCTGCAGGGGAAGACAAACTTCTTTGAGAAGCGCGTCGGGGAGTAC 59769 >seq16195 Length=15917 Score = 114 bits (126), Expect = 2e-20 Identities = 109/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 125438 CGCCGCCGTAGAGGGCATCTTCTT-TTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGA 125496 |||| |||||||||||||||||| || || | || ||| ||||||||||||||||||| Sbjct 106 CGCCTACGTAGAGGGCATCTTCTTCTTGGGCTCCTTCTGC-GCCATCTTTTGGCTCAAGA 164 Query 125497 AGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCC 125556 |||| || |||||||| || || || | |||||| | || || || |||||||||| Sbjct 165 AGCGTGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCC 224 Query 125557 TACACTGTGACTTTGCC 125573 | ||||| ||||| ||| Sbjct 225 TGCACTGCGACTTCGCC 241 >seq8389 Length=83750 Score = 114 bits (126), Expect = 2e-20 Identities = 331/492 (67%), Gaps = 17/492 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| | ||||| ||||| ||| ||||| ||||||| ||| ||||| || || Sbjct 79951 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTGGACCTC 80010 Query 125079 TCCAAGGAC-CTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATAT 125136 ||| ||| | || | ||||| || | | | || ||||| | || | | Sbjct 80011 TCCGGCGACGCCCGAC-ACTGGGACGAGGTGCTCTCCCCCGAC-GAGCGCCACTTCGTCT 80068 Query 125137 CGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACAC 125196 | ||| | | |||||||| |||| |||||| || ||||| ||| || ||| | | Sbjct 80069 CCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTGGCCTCCC 80128 Query 125197 GATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCAT 125254 | ||| | || || || | | |||| || || || ||||| ||||| ||| Sbjct 80129 GCTTCATGTCC-GACGTGCAGGTCGCCGAGGCC-CGCGCCTTCTACGGCTTCCAGATCGC 80186 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 || |||||| | |||||||| |||||||| ||| | || | ||||| ||||| | Sbjct 80187 CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGA-CG 80245 Query 125315 GCAACGTAAAC-ACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 || || || || || || ||| |||||||| || || | | || |||| Sbjct 80246 GCGCCGAGAAGGACCGCCTGTTCCGCGCCATCGACACTGTCCCCGCCGTCCGGCGCAAGG 80305 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-CTTCGTACGCCGACAGACTGGTG 125432 | | |||| || || |||||||| | || | || ||||| |||| | || || Sbjct 80306 CCGACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCG----CCGAGCGCCTCGTC 80361 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCT 125491 || |||||| ||| |||||||||||||| ||||| | || ||| |||||||| ||||| Sbjct 80362 GCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGC-GCCATCTTCTGGCT 80420 Query 125492 CAAGAAGCGCGG 125503 |||||||||||| Sbjct 80421 CAAGAAGCGCGG 80432 >seq10755 Length=49669 Score = 107 bits (118), Expect = 3e-18 Identities = 104/131 (79%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 125444 CGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCG 125502 |||||||||||||||||| ||||| | |||||| |||||||| ||||||||||||||| Sbjct 35747 CGTAGAGGGCATCTTCTTCTCGGGCTCCTTTTGC-GCCATCTTCTGGCTCAAGAAGCGCA 35805 Query 125503 GACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACT 125562 | ||||||| || || || | | |||| | || || || || ||||||||||||| Sbjct 35806 GCCTCATGCTGGGCCTCACCTTCTCCATCGAGCTCATCTCCCGCGATGAGGGCCTACACT 35865 Query 125563 GTGACTTTGCC 125573 | ||||| ||| Sbjct 35866 GCGACTTCGCC 35876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740897686147360