Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq11736 86.0 5e-12 seq12004 82.4 6e-11 >seq11736 Length=148999 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| ||||| ||||| ||||| || |||| ||| | ||||||||||| || || Sbjct 10200 GTAGATTCCTTCTGAATGTTGTAGTCAGCCAATGTGCGCCCATCCTCCAGCTGCTTCCCA 10141 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || |||||||| ||| ||| | |||||| ||||| ||| || || Sbjct 10140 GCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTG 10081 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| || ||| ||| |||| || ||||| || ||||| | ||| Sbjct 10080 ACATTGTCGATGGTGTCGGAGCTCTCAACCTCGAGAGTGATGGTCTTCCCTGTGAGAGTC 10021 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 10020 TTGACGAAGATCTGCAT 10004 >seq12004 Length=146743 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || |||||||| || || || |||||||| | ||| ||||||| Sbjct 145608 CACCAAGTGCAGGGTGGACTCCTTCTGTATGTTATAATCCGCGAGTGTGCGACCGTCCTC 145549 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| ||| || | |||||| ||||| Sbjct 145548 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTG 145489 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | ||| ||||| | |||| || | ||| ||||| || Sbjct 145488 GATCTTCGCCTTCACATTATCGATTGTATCAGACGACTCCACCTCCAGGGTGATGGTCTT 145429 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || || ||||| || ||||| Sbjct 145428 TCCGGTCAAGGTCTTCACAAAGATCTGCAT 145399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414484702761784