Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq11736 127 5e-24 seq8356 125 2e-23 seq12936 122 2e-22 seq12004 118 2e-21 seq12418 111 4e-19 seq12880 105 2e-17 seq9492 96.9 8e-15 seq11548 91.5 3e-13 >seq11736 Length=148999 Score = 127 bits (140), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||| |||||||| || || || | | || | ||||| Sbjct 10443 AGGACAAGATGAAGAGTGGATTCCTTCTGAATGTTGTAATCTGCCAAGGTACGCCCGTCC 10384 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || |||||||| ||||||||||| || || || || ||| Sbjct 10383 TCCAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGATCAGGAGGAATCCCCTCCTTGTCC 10324 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATA 104524 || ||||| || || ||||| || | ||| || ||| ||| || || || || || Sbjct 10323 TGGATCTTGGCCTTCACATTATCAATGGTGTCAGAGCT---TTCCACTTCCAGGGTGATG 10267 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| ||||| || ||||| |||||||| Sbjct 10266 GTCTTGCCAGTCAGTGTCTTGACAAAGATCTGCAT 10232 Score = 125 bits (138), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | |||||||| |||||||| || |||||| Sbjct 10233 ATCCCTCCCCTGAGACGCAGGACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCA 10174 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || || || || || || |||||||| || |||||||| || || || Sbjct 10173 GCCAATGTGCGCCCATCCTCCAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGG 10114 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || ||||||||||| || || ||||| || | ||| ||| || | || Sbjct 10113 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCG-GAGCTCTC 10055 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || || || |||||||| Sbjct 10054 AACCTCGAGAGTGATGGTCTTCCCTGTGAGAGTCTTGACGAAGATCTGCAT 10004 >seq8356 Length=84350 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || ||||||| | || | || || || || || || ||| Sbjct 46904 GTGGACTCTTTCTGAATGTTGTAGTCAGCAATCGTGCGCCCATCCTCCAGCTGCTTGCCA 46845 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || ||| ||| || || || || ||||| || ||||||||||||||||| || Sbjct 46844 GCAAAGATAAGCTGCTGCTGCTCTGGTGGAATTCCCTCCTTATCCTGAATCTTTGCCTTG 46785 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || ||| | || ||||| || || || ||||| ||||| || || Sbjct 46784 ACATTATCAATTGTGTCGGATGACTCCACCTCAAGGGTGATTGTCTTCCCAGTGAGGGTC 46725 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 46724 TTCACAAAGATCTGCAT 46708 >seq12936 Length=140512 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | || || || || || || || || || ||||| || || || Sbjct 38867 ATGCCTCCACGTAGACGGAGGACAAGGTGCAAGGTGGACTCCTTTTGAATGTTGTAATCT 38926 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||||| || || || || ||||| || || || | || || || ||| Sbjct 38927 GCAAGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCTGGA 38986 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || |||||||||||||| || ||||| || | || || || || Sbjct 38987 GGAATTCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCAATCGTGTCAGAAGACTCC 39046 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| ||||| || || || ||||| |||||||| Sbjct 39047 ACCTCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 39096 >seq12004 Length=146743 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || || || || || || | || || ||||||||||| || |||||| Sbjct 145400 ATGCCTCCCCTCAGTCTGAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCA 145341 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||| || || || || || || || || || || | ||| || || || Sbjct 145340 GCTAAGGTGCGACCATCCTCAAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCCGGT 145281 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | || || | || Sbjct 145280 GGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTGTCTGAGGACTCA 145221 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||||| || ||||| ||||| | || || ||||| |||||||| Sbjct 145220 ACCTCTAGTGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 145171 >seq12418 Length=36051 Score = 111 bits (122), Expect = 4e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || || || | || || || |||||||| || |||||| Sbjct 33547 ATGCCTCCCCTAAGGCGAAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCA 33606 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || || || || || || ||||| || || | || ||| || || ||| Sbjct 33607 GCCAAGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAACCGCTGCTGGTCCGGA 33666 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || |||| |||||| || |||||||| || | || || | || Sbjct 33667 GGGATACCTTCCTTGTCCTAAATCTTCGCCTTTACATTATCGATAGTGTCAGAGGACTCG 33726 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 || || || ||||||||||| ||||| || || || || || ||||||| Sbjct 33727 ACTTCAAGAGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCA 33775 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || || || || || || | || || ||||||||||| || || ||| Sbjct 33321 ATGCCTCCCCTCAGTCTGAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCA 33380 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || || || || || || || ||||| || || | |||||| || | Sbjct 33381 GCCAAGGTGCGGCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGCTGTTGGTCCAGT 33440 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTC 104508 || || || || || ||||||||||| || || ||||| | | || | ||| || Sbjct 33441 GGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTTGATTGT---GTGAGGACTC 33497 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| ||||| || ||||| ||||| | || | ||||| |||||||| Sbjct 33498 AATCTCCAGTGTGATGGTCTTTCCAGTCAAGGTCGTCACAAAGATCTGCAT 33548 >seq12880 Length=140709 Score = 105 bits (116), Expect = 2e-17 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || | ||| || || ||||| || || ||||| | || || | ||||| Sbjct 18826 AGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCC 18885 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || |||| ||| || || || || || || || |||||| Sbjct 18886 TCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCC 18945 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGT 104526 |||||||| ||||| || || || | ||| || | ||| || ||||| | || || || Sbjct 18946 TGAATCTTGGCTTTCACGTTGTCGATGGTGTC-CGAGGACTCCACCTCCAACGTGATGGT 19004 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||| || || || || || || || |||||||| ||| Sbjct 19005 CTTTCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 19041 >seq9492 Length=177167 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | ||| || || ||||| || || ||||||| Sbjct 137921 TTCCACCCCTGAGCCTCAGGACCAAATGAAGTGTTGACTCCTTCTGGATGTTGTAGTCAG 137980 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || ||||| || ||||| | ||| || ||||||||||| ||||| || || || || | Sbjct 137981 CTAATGTTCTCCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGG 138040 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 138041 GAATGCCCTCCTTGTCCTGAA 138061 >seq11548 Length=265335 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| | || || | || || || ||||| || ||||||||| Sbjct 39534 TCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAA 39475 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || || || || || || || ||||| ||||| || || || || Sbjct 39474 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 39415 Query 104489 TCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | ||| || || | || ||||| | ||||| || || ||||| || || || || Sbjct 39414 TCAATGGTGTC-AGAGCTCTCAACCTCCAAGGTAATGGTTTTGCCAGTGAGGGTCTTCAC 39356 Query 104548 AAATATCTGCAT 104559 || |||||||| Sbjct 39355 GAAGATCTGCAT 39344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151141179036688