Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq6240 125 6e-24 >seq6240 Length=92588 Score = 125 bits (138), Expect = 6e-24 Identities = 172/236 (73%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| || || |||| | | || |||| ||| | ||||||| Sbjct 15946 ACGCCGGTGGATCCGAACCCTCCCTCGCCGCGCACGGTGGCGTCGAGGTCCTCCACCTCC 15887 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || ||| | | | |||| ||||| |||||| || |||||||| | ||| Sbjct 15886 GCGACCTCCGGCGTCGCGATCAC-CTCGATGATCATCTGCGCGATCCGGTCGCCGGGCTT 15828 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 || |||| || || |||| |||||| || | || || || ||||||||| Sbjct 15827 CACTGCGAAGTCCGCGT--CCGAGTGGTTGAAGAGGATGACCCCGACCGGGCCGCGGTAA 15770 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||||| |||||||||||||||||||||||| ||||||| | |||||| || || Sbjct 15769 TCGGCGTCGATCACGCCCGCGCCCACGTCGATGGAGTGCTTCAACGCCAGCCCCGA 15714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429963012902432