Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq11548 111 1e-19 seq12936 100 2e-16 seq11062 100 2e-16 seq12004 95.1 1e-14 seq11736 93.3 4e-14 seq12418 89.7 4e-13 seq16592 84.2 2e-11 seq12070 84.2 2e-11 seq8356 84.2 2e-11 >seq11548 Length=265335 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||||||||||| || |||||||| |||| ||| || ||| | ||||| ||||| Sbjct 38850 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAG-CAAGCGTGCGCCCATCCTCGAGCTG 38792 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||| || || | | ||||||||| || || Sbjct 38791 CTTGCCGGCGAAGATGAGCCGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTT 38732 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| || | ||||||| ||||| || ||||| || ||||| Sbjct 38731 GGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGT 38672 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || || ||||| ||||||||| Sbjct 38671 GAGGGTCTTAACAAAGATCTGCATC 38647 >seq12936 Length=140512 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 ||||||||||||||||||||| | ||| || ||| ||||||| |||||||| || || Sbjct 38905 CTCCTTTTGAATGTTGTAATCTG-CAAGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGA 38963 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | || ||||| || || | | |||||||||| ||| || ||||| | Sbjct 38964 AGATAAGGCGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCCTGAATCTTTGCCTTGACAT 39023 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || || || | ||||||| ||| | || || || || || ||||| || |||| Sbjct 39024 TGTCAATCGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAGTGAGGGTCTTCA 39083 Query 48714 CAAAAATCTGCATC 48727 |||| ||||||||| Sbjct 39084 CAAAGATCTGCATC 39097 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| ||||| || ||||||||||| |||| ||| ||||||| ||||| Sbjct 38437 ATGGAGGGTGGATTCCTTCTGGATGTTGTAATCCGCCAGGGTACGCCCGTCCTCAAGCTG 38496 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | |||| | |||||||| ||| || | | ||||||||| || || Sbjct 38497 CTTGCCGGCAAAAATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 38556 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | || || || | |||||| ||| | || ||||| || ||||| Sbjct 38557 CGCCTTCACATTGTCGATAGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTGCCGGT 38616 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || ||||| || ||||||||| Sbjct 38617 GAGCGTCTTCACGAAGATCTGCATC 38641 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAAT-TGTCGCTCGTCCTCCAGCTG 48582 || || ||| |||||| |||||| |||||| ||| || ||| || ||||| ||||| Sbjct 33736 TGCAGGGTGGACTCCTTCTGAATGCTGTAATTAGCAAACGTGTGGCAA-TCCTCGAGCTG 33794 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | | | ||||||||||| || || | |||||||||| || || Sbjct 33795 CTTGCCAGCGAAGAACAGTCGCTGCTGATCAGGGGGAACCCCTTCCTTGTCCTGAACCTT 33854 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||| | | || || || | |||||| ||||| || ||||| || || || Sbjct 33855 TGCCTTGGCATTGTCAATAGTGTCAGATGACTCCACCTCGAGGGTGATGGTCTTGCCAGT 33914 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 |||||| |||||||| ||||||||| Sbjct 33915 GAGAGTCTTCACAAAGATCTGCATC 33939 >seq11062 Length=46929 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || |||||||||| || |||||||| || || || || ||| | |||| Sbjct 43918 CACCAAGTGGAGGGTGCTCTCCTACTGGATGTTGTAGTCCGC-AAGGGTGCGCCCATCCT 43860 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| ||| || | || | | |||||| || || | | ||||||||| Sbjct 43859 CGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCT 43800 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||||| ||||| | | || || || | ||||||| ||| | || ||||| | Sbjct 43799 GGATTTTGGCCTTGACATTGTCGATTGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCT 43740 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | |||||||| || ||||| |||||||||||| Sbjct 43739 TGCCGGTGAGGGTCTTCACGAAAATCTGCATC 43708 >seq12004 Length=146743 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||| |||||| || ||||| ||||| || | | || ||||||| Sbjct 145608 CACCAAGTGCAGGGTGGACTCCTTCTGTATGTTATAATCCGCGAGTGTGCGACCGTCCTC 145549 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| ||| || | || | |||||||| ||| ||| | | |||||||| Sbjct 145548 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTG 145489 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| ||| | | | || ||||| | |||||| ||| | || ||||| || Sbjct 145488 GATCTTCGCCTTCACATTATCGATTGTATCAGACGACTCCACCTCCAGGGTGATGGTCTT 145429 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | || |||||||| |||||||| Sbjct 145428 TCCGGTCAAGGTCTTCACAAAGATCTGCAT 145399 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || || | ||| | ||||| ||| ||| || ||||||||||| ||||| Sbjct 145397 CCTCCCCTCAGTCTGAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCT 145338 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| |||||||| || || | || | ||||||||| ||| || Sbjct 145337 AAGGTGCGACCATCCTCAAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCCGGTGGA 145278 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| ||| ||| ||| | | | || || || | ||||| | Sbjct 145277 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTGTCTGAGGACTCAACC 145218 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| ||||| || || || | || |||||||| |||||||| Sbjct 145217 TCTAGTGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 145171 >seq11736 Length=148999 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || ||||| ||||||||||| ||||||||| ||| | ||||||||||| Sbjct 10207 ATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGCCAATGTGCGCCCATCCTCCAGCTG 10148 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | |||||| ||| || | | ||||||||| ||| || Sbjct 10147 CTTCCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTT 10088 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| |||| ||| ||||| || ||||| || || || Sbjct 10087 GGCCTTGACATTGTCGATGGTGTCGGAGCTCTCAACCTCGAGAGTGATGGTCTTCCCTGT 10028 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 |||||| || || || |||||||| Sbjct 10027 GAGAGTCTTGACGAAGATCTGCAT 10004 >seq12418 Length=36051 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| ||||||||||| |||||||| || | ||||| |||||| Sbjct 33574 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGGCCATCCTCAAGCTGC 33633 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || || |||||||| ||| || | || |||||||||| ||| ||| Sbjct 33634 TTGCCAGCGAAGATCAACCGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTAAATCTTC 33693 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | || || || | ||||| || | || || || || || ||| Sbjct 33694 GCCTTTACATTATCGATAGTGTCAGAGGACTCGACTTCAAGAGTAATAGTCTTGCCAGTG 33753 Query 48704 AGAGTTTTCACAAAAATCTGCA 48725 || || || || |||||||||| Sbjct 33754 AGGGTCTTGACGAAAATCTGCA 33775 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || || | ||| | ||||| ||| ||| || |||||||||||||||||| Sbjct 33324 CCTCCCCTCAGTCTGAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGCC 33383 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| |||||||| ||| | | || | |||||| || |||| || Sbjct 33384 AAGGTGCGGCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGCTGTTGGTCCAGTGGA 33443 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| ||| ||| ||| | | || || | | ||||| || Sbjct 33444 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTTGATTGTGT--GAGGACTCAATC 33501 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| ||||| || || || | || ||||||| |||||||| Sbjct 33502 TCCAGTGTGATGGTCTTTCCAGTCAAGGTCGTCACAAAGATCTGCAT 33548 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||| || ||||| | ||| || ||||||| |||||||| ||| | Sbjct 33813 CTCCTTCTGGATGTT-TAGTCAGC-ATGCGTCCGCCCGTCCTCGAGCTGCTTGCCGGCAA 33870 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||||||| | | | ||||||||| || || ||||| | Sbjct 33871 AGATCAGGCGCTGCTGATCCGGTTGGATCCCCTCCTTGTCCTAGATCTTTGCCTTGACAT 33930 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || ||||| | ||||| ||||| || ||||| || || ||||| || |||| Sbjct 33931 TGTCAATTGTATCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 33990 Query 48714 CAAAAATCTGCATC 48727 |||| ||||||||| Sbjct 33991 CAAAGATCTGCATC 34004 >seq16592 Length=119134 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/164 (72%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 48566 CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTT 48625 ||| | |||||||||||||| ||| || | || | |||||||| ||| || | | Sbjct 52662 CGCCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCC 52603 Query 48626 TCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGA 48683 ||||||||| || || ||||| | | || ||||| || | |||||| ||||| Sbjct 52602 TCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCCGAGGACTCCACCTCGA 52545 Query 48684 CTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| || |||||||| || || ||||| ||||||||| Sbjct 52544 GGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCATC 52501 >seq12070 Length=146516 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 48511 CCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC 48570 ||| | ||| | || || ||| |||||| || |||||||| || |||| || | Sbjct 65907 CCTGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCC 65966 Query 48571 GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTT 48630 |||||||||||||| || || | || | ||||||||| ||| || | | ||||| Sbjct 65967 ATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTT 66026 Query 48631 GTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTT 48688 |||| || ||| ||| | | | || || || || | ||||| ||| | || Sbjct 66027 GTCCTGGATCTTCGCCTTCACGTTGTCG--ATCGTGTCCGAGGACTCGACCTCAAGCGTA 66084 Query 48689 ATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || |||||||| || ||||| || ||||||||| Sbjct 66085 ATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATC 66123 >seq8356 Length=84350 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| ||| || ||||||||||| ||||| ||| || ||| | ||||||||||| Sbjct 46910 TGCAGGGTGGACTCTTTCTGAATGTTGTAGTCAGC-AATCGTGCGCCCATCCTCCAGCTG 46852 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | ||||||| || || | | ||||| ||| ||| || Sbjct 46851 CTTGCCAGCAAAGATAAGCTGCTGCTGCTCTGGTGGAATTCCCTCCTTATCCTGAATCTT 46792 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || || |||| |||||| ||| | || || || || || || Sbjct 46791 TGCCTTGACATTATCAATTGTGTCGGATGACTCCACCTCAAGGGTGATTGTCTTCCCAGT 46732 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || |||||||| ||||||||| Sbjct 46731 GAGGGTCTTCACAAAGATCTGCATC 46707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421161683593436