Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq11448 116 2e-21 seq11915 114 7e-21 seq10919 113 2e-20 seq16102 111 8e-20 seq13374 111 8e-20 seq12890 109 3e-19 seq5104 109 3e-19 seq12592 107 1e-18 seq9550 105 3e-18 seq9547 105 3e-18 seq1888 105 3e-18 seq10181 104 1e-17 seq13268 102 4e-17 seq12559 100 1e-16 >seq11448 Length=151805 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 48046 AAAAAAGAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 48105 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 48106 GCTCTAACCAACTGAGCTAATAGGCC 48131 >seq11915 Length=147649 Score = 114 bits (126), Expect = 7e-21 Identities = 84/96 (88%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 |||| |||||||| | |||| ||||||||| | | |||||||| |||||||||||||| Sbjct 84711 AGAAAAAATAAAAA-TAAAATGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 84653 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||||| |||| Sbjct 84652 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 84617 >seq10919 Length=48277 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| |||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 25581 AAAACCAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 25522 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 25521 TCTAACCAACTGAGCTAATAGGCC 25498 >seq16102 Length=121583 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 52389 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 52448 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 52449 CAACTGAGCTAATAGGCC 52466 >seq13374 Length=29843 Score = 111 bits (122), Expect = 8e-20 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 26919 AAAATAAAAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 26978 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||||| ||||||||||||||| |||| ||| Sbjct 26979 GCTCTAACCAACTGAGCTAATAGGCCTTCG 27008 >seq12890 Length=32808 Score = 109 bits (120), Expect = 3e-19 Identities = 79/91 (87%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||| ||| ||| | ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 8378 AATATTAAAACAACTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 8319 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||| ||||||||||||||| ||||| Sbjct 8318 CGACGCTCTAACCAACTGAGCTAATAGGCCG 8288 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 10665 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 10606 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 10605 CTGAGCTAATAGGCC 10591 >seq5104 Length=211340 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 125240 ATGAAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 125297 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 125298 ACGCTCTAACCAACTGAGCTAATAGGCC 125325 >seq12592 Length=254507 Score = 107 bits (118), Expect = 1e-18 Identities = 84/100 (84%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 || ||||| || || |||| || ||||||||| | | |||||||| |||||||||| Sbjct 204021 AAAATAGATTTTTTATAAAAA-AAGCTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGC 203963 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| ||||||||||||||| |||| Sbjct 203962 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 203923 >seq9550 Length=64334 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 36743 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 36802 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 36803 CTGAGCTAATAGGCC 36817 >seq9547 Length=176287 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 139033 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 138974 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 138973 TGAGCTAATAGGCCG 138959 >seq1888 Length=224165 Score = 105 bits (116), Expect = 3e-18 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||| || ||| ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 181013 AAAAGATTTAATCTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 181072 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 181073 CGCTCTAACCAACTGAGCTAATAGGCC 181099 >seq10181 Length=168040 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 130999 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 131058 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 131059 TGAGCTAATAGGCC 131072 >seq13268 Length=30491 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 9507 AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 9566 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 9567 CAGCTGAGCTAATAGGCC 9584 >seq12559 Length=176254 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 11503 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCATC 11444 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 11443 TGAGCTAATAGGCC 11430 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261435632793136